BAC Information

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BAC

Clone NameMSMg01-426F04
Chromosome14 (Build37)
Map Location 30,308,192 - 30,467,122
singlet/doubletdoublet
Overlap geneCacna2d3
Upstream geneWnt5a, LOC100040218, Lrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426F04.T7 (MSMg01no426_f04.b1)MSMg01-426F04.TJ (MSMg01no426_f04.g1)
ACCAG519792AG519793
length786783
length of high quality
(start - end)		530 (38 - 567)446 (73 - 518)
definitionCHROMAT_FILE: MSMg01no426_f04.b1 PHD_FILE: MSMg01no426_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:49 2005CHROMAT_FILE: MSMg01no426_f04.g1 PHD_FILE: MSMg01no426_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,308,192 - 30,308,717)(30,466,677 - 30,467,122)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGT
ATTGGGATGTAAATGATACATTTTAAAGTAAATCCAACGGCACAAAGACA
CACTCAATCCCTCCTTGGGACTGTTTCCTTATGTTACTGCCGGACAAACT
TAGCCTTTAATGTAATGTCTCTCGTCTCTTGAAGCCGTTTTAACAGAAAA
TCTGAAGAGAAATAGAAAAAACACAAACTATACTATACTGCCTCACCTCT
GCCTTCTCCCCACACCCTACCCCATCATTAACATACTGTGCTAGTGTAAT
GTATATGTCTAGTCAGTGGGACACGTGCTATCATTCCCAATAGGGTTCAT
TCTGGTGGGGCGTGTCCTTGGGGTTTGGGGCTGTATAGTGGCATGGATTA
CAGTGCCAAACAGAAGCTTTACTGTTCAGTCAGTATTCCCACTCACTCTT
CCTCAAATTCTTAGAGGAAACAATCTTTCCTACTGTCTCCATGGCTTTGC
CTTTTTGCAGAAGGGCATATGGCTGGACTCTTAGAGCATGCAACCTTTTC
AATTTTGTTTCTTACAGGTGTAATTGTCTTCATAGGTTGATCATTTGCTT
CTATTTGGATCTGAGCCACATTTCCTTACCTGAATATGGCAAAGCTCATC
TATCCATTCATCTAAGCTGCTTCCCAATGTTTTGGCTTTTGGAAAGAAAA
AAAACATTAACCACTTGGGCCGCGGGTAAAAAAAAAGATTCTAGATTGGG
CTAAGGGTAACAAAACCACATTGCTCGGGTCATCTG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCATGTTGCAGGTGGACAGTGACTTGT
GATCGAGGCAGAGAGAGTGTGAGCTAGACCCTATTCTTTGGTGGTGTGTG
GAAACCACAGTGACGTCCAGACAGAATCTTGGGGCATTTAAAAGCTAGAG
ACCTAAAGGAAGCATCCACAGAGAGCAGCAATTTTCAGTACTGGAGCTTC
AGGTCTCAGTGGTGGGCAAGATCTCTGGTGAATGACTAGATCTCTAATGA
ATGACTCTTCTGAGTCTGCCACTGCCCTGGCATGATGTTCAAGATTGATT
GTCAACTTGACAGAATCTAGCATCACCCAAGAATCAAGCCTCTAGGCATG
GCTGTGAGGAACTGTTTAGACTAGGTGAGCTGTGACAAGGCCCACCCTGA
TTGTATGTGGGAACCAGAAGGAAAAAGGTGGCTGGACCCTAGTATTTTTT
CTTCTTTGCTTGTAGACAGCTGCCTCAGGAACCTGCCCTGATTCAAGCTA
ATAACGGTTTTCCCCCTCCTTTCCCCCAGAAAGAGATTCGGAGGGTGTAT
GAACTCACCAGGGCTATTCGTCCTTTTCCCAAACGCCCCTTCTGCCTCCT
AGACCCCCTGTTTTCTGCGTCCACAAAGTTCCTATAAATCTCCTCTTTGT
TCTCTCCCACAACTAAATTCCTTAAACGCTCTATAACCTCTGTTTGGTTC
TCCTCACCCCCTTTCTGTCCTCCTTTTCTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_f04.b1 MSMg01no426_f04.b1 CHROMAT_FILE:
MSMg01no426_f04.b1 PHD_FILE: MSMg01no426_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:49 2005
         (530 letters)



>mm_chr14_30307988_30308917
          Length = 930

 Score =  971 bits (502), Expect = 0.0
 Identities = 520/526 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtattgggatgtaaatgatacattttaaagtaaatccaacggcacaaagacac 64
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattctgtattgggatgtaaatgatatattttaaagtaaatccaacggcacaaagaaac 264

                                                                       
Query: 65  actcaatccctccttgggactgtttccttatgttactgccggacaaacttagcctttaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actcaatccctccttgggactgtttccttatgttactgccggacaaacttagcctttaat 324

                                                                       
Query: 125 gtaatgtctctcgtctcttgaagccgttttaacagaaaatctgaagagaaatagaaaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 325 gtaatgtctctcgtctcttgaagccgttttaacagaaaatctgaagagaaatagaaaaac 384

                                                                       
Query: 185 cacaaactatactatactgcctcacctctgccttctccccacaccctaccccatcattaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 cacaaactatactatactgcctcacctctgccttctccccacaccctactccatcattaa 444

                                                                       
Query: 245 catactgtgctagtgtaatgtatatgtctagtcagtgggacacgtgctatcattcccaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catactgtgctagtgtaatgtatatgtctagtcagtgggacacgtgctatcattcccaat 504

                                                                       
Query: 305 agggttcattctggtggggcgtgtccttggggtttggggctgtatagtggcatggattac 364
           ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 505 agggttcattctggtggggcgtgtcctgggggtttgggactgtatagtggcatggattac 564

                                                                       
Query: 365 agtgccaaacagaagctttactgttcagtcagtattcccactcactcttcctcaaattct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtgccaaacagaagctttactgttcagtcagtattcccactcactcttcctcaaattct 624

                                                                       
Query: 425 tagaggaaacaatctttcctactgtctccatggctttgcctttttgcagaagggcatatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagaggaaacaatctttcctactgtctccatggctttgcctttttgcagaagggcatatg 684

                                                         
Query: 485 gctggactcttagagcatgcaaccttttcaattttgtttcttacag 530
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctggactcttagagcatgcaaccttttcaattttgtttcttacag 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_f04.g1 MSMg01no426_f04.g1 CHROMAT_FILE:
MSMg01no426_f04.g1 PHD_FILE: MSMg01no426_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:49 2005
         (446 letters)



>mm_chr14_30466663_30467508
          Length = 846

 Score =  855 bits (442), Expect = 0.0
 Identities = 445/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatgttgcaggtggacagtgacttgtgatcgaggcagagagagtgtgagctagaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttcatgttgcaggtggacagtgacttgtgatcgaggcagagagagtgtgagctagaccct 401

                                                                       
Query: 61  attctttggtggtgtgtggaaaccacagtgacgtccagacagaatcttggggcatttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 attctttggtggtgtgtggaaaccacagtgacgtccagacagaatcttggggcatttaaa 341

                                                                       
Query: 121 agctagagacctaaaggaagcatccacagagagcagcaattttcagtactggagcttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agctagagacctaaaggaagcatccacagagagcagcaattttcagtactggagcttcag 281

                                                                       
Query: 181 gtctcagtggtgggcaagatctctggtgaatgactagatctctaatgaatgactcttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gtctcagtggtgggcaagatctctggtgaatgactagatctctaatgaatgactcttctg 221

                                                                       
Query: 241 agtctgccactgccctggcatgatgttcaagattgattgtcaacttgacagaatctagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 agtctgccactgccctggcatgatgttcaagattgattgtcaacttgacagaatctagca 161

                                                                       
Query: 301 tcacccaagaatcaagcctctaggcatggctgtgaggaactgtttagactaggtgagctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tcacccaagaatcaagcctctaggcatggctgtgaggaactgtttagactaggtgagctg 101

                                                                       
Query: 361 tgacaaggcccaccctgattgtatgtgggaaccagaaggaaaaaggtggctggaccctag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tgacaaggcccaccctgattgtatgtgggaaccagaaggaaaaaggtggctggaccctag 41

                                     
Query: 421 tattttttcttctttgcttgtagaca 446
           |||||||| |||||||||||||||||
Sbjct: 40  tattttttgttctttgcttgtagaca 15


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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