BAC Information

Click to search

BAC

Clone NameMSMg01-426M16
Chromosome14 (Build37)
Map Location 79,733,481 - 79,733,587
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik
Downstream geneNarg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426M16.T7 (MSMg01no426_m16.b1)MSMg01-426M16.TJ (MSMg01no426_m16.g1)
ACCAG520146AG520147
length862884
length of high quality
(start - end)
58 (121 - 178)108 (74 - 181)
definitionCHROMAT_FILE: MSMg01no426_m16.b1 PHD_FILE: MSMg01no426_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:27 2005CHROMAT_FILE: MSMg01no426_m16.g1 PHD_FILE: MSMg01no426_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCNNNCNTTATANANTCACTATTTCCANNANNACCGCGNAANNCC
ATCTCCTGACCANTTCCTGTCAGTTTAATCTTGCAAAACTGTANTTAAAA
AAACAGACATGNNNAAGGNNTCCAGTGATCCCTCTGTCCTTTCATCANCA
TGACCGCACTGGNTGCCTCTCTTTGTCTGCTCTCACTATATCGTCCNNNN
TGNNNAGTAAGGTCCCTGGACTAGATTAGGNTAAGTCCAGCTGNAATNTA
NAATCTTTTGTTTTNTTNNNNGGGGGGCGGTCGTTCTTNNTCGNNNNNNC
TAGGGGACGGCGTGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGCGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGG
GCGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGAGGGGGGAGGGGGG
GGGGCTNNNNNNNNNNNNNNNNNNNNNNNNNTNNTTTNTTTNTTTCCTTT
TTCCNCGGTTGTGGAGTTANNNNNNNTNNNNNNNNNNNNNCNTTCNTNNN
CTNTNNTTNTCCTTCTTTCTCNTTTNTTTTTTTTTNNCNNNNNTTTTNTT
TTCTTTTTTTCNTTTTTTTCTCCCCCCCTTTCNNNCNCTTCCCNTCTTTC
NCCCTTCTTTTCTTTTTTCNNTTCTCCTCTCCCTTTTTTTNTCCCCTTTT
TNNCCTTTTTTCTTCCTTTTCTCCCNCTTTTCNCTTCCTTTCCTTTTTCN
TCCCTCTCTTCCCCCNTTNNTTNCNTNNTTTTTNNTTTCCTTTCTTTTNC
TNTTTTTTCTTTTTNNCNNCCCCCTNNTCTCTTNTTCCTTTTCACTTTTT
TTTATATATAGG
CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGTATGTGCCGTTGAGATGTGAGTG
GTCAGATGTAGGCCCGTGGTACTTCCTAAACTTCCCTTACCTCAGCCAGA
GCTGATGTGTGGGTAGAATGGGGAGGGGAGCTNNTTNNNNTTCNTTCTCT
TTNTCTTTTTTCTTCTTCCGTTCTGTTTTTCTTCCTTTTTTTTTTTTTTC
GTTTTCTGCCTCGTCTTTTTCTTCTTTTTTTTTTCTTTTTTTGCTTCCCC
TGTTTCCCTCGCCTTTTTTTTTTTTTTTCCGCGCCCCCCGTCGGGTGGGC
GCCTGTTTTTTTTTTCCTCTTCCTCTTTGCTTGTTTTGCTTTTTTCTTTT
TTTCCTTTTCTTTTCCTCTTTCCCTCTCTTTTTTTCTCCTTTTTTTCTTT
CTTTTCCTTTCCTTCCCGTTTTTTCTCTCTTTTCTTTTCGCTTCTTTTCT
TCTTTTTTTCCTTTTTCTTTTCTCCTCTCTTTTCTCTTTTCCTTTTTCTT
CCTTTTTTTTTCTTTTTTTTCTCTCTTTCCTTTTTCCCTTTTTTTCTCCC
CTTTCTCTTTTCCTCTTTTTCTCCCTCTTATTCCTCTTTCTTCTTCCTTT
CCTTCTTTCTCTTTATTTTCCTCTTTCTTTCTTTTCTTCCCTTTTTTTTT
CCTCTTCTCCCTTTTCCTCTCCTCCTTTTTCTTTCCTGTCTTTCTATTCT
GTTTTCTTATTCTCCTCTTTCTCCTCTCTCTCTTTTTTCTATCTCCTGTT
ATCTCCTTTCCNCTCTCGTCGTTTCCCTTCTTCTTTCTCTCTCCTTTTTT
TCTGTTTCTCTTTTCTTTTCCTTTCTTTCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_m16.g1 MSMg01no426_m16.g1 CHROMAT_FILE:
MSMg01no426_m16.g1 PHD_FILE: MSMg01no426_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:27 2005
         (108 letters)



>mm_chr14_79733281_79733788
          Length = 508

 Score =  199 bits (103), Expect = 3e-56
 Identities = 106/107 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtatgtgccgttgagatgtgagtggtcagatgtaggcccgtggtacttcctaaactt 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agtgtatgtgcagttgagatgtgagtggtcagatgtaggcccgtggtacttcctaaactt 248

                                                          
Query: 61  cccttacctcagccagagctgatgtgtgggtagaatggggaggggag 107
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cccttacctcagccagagctgatgtgtgggtagaatggggaggggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 508
Length adjustment: 8
Effective length of query: 100
Effective length of database: 500
Effective search space:    50000
Effective search space used:    50000
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)