BAC Information

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BAC

Clone NameMSMg01-426N05
Chromosome14 (Build37)
Map Location 83,345,323 - 83,509,428
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426N05.T7 (MSMg01no426_n05.b1)MSMg01-426N05.TJ (MSMg01no426_n05.g1)
ACCAG520171AG520172
length784779
length of high quality
(start - end)		436 (65 - 500)475 (68 - 542)
definitionCHROMAT_FILE: MSMg01no426_n05.b1 PHD_FILE: MSMg01no426_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:30 2005CHROMAT_FILE: MSMg01no426_n05.g1 PHD_FILE: MSMg01no426_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,345,323 - 83,345,758)(83,508,979 - 83,509,428)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGCAGATAGCTTTCCTATGTCTGTAATTATGACCTTTGTACAGACC
TTGGCAAGCTGCCAGGCCTTCACTTTGAAAATTCTGCTCTGGGGTACATT
GATTATAGTGTAGTTATTAACACTTGATTATAGGTTCTAAGAATTGTGTT
TAGAGGTTTCAATACATTATGGATCATACTGTTACAAGTACATATTTTTT
GAATATGAGTTTTCTTGAAATTCTAGACAGAAACATTAAAAGCTCACATC
TTTGACACACAATTGTTGCTTTCATATAGATTTTTCTGTTTCATAATTTC
CTAAGAGTTGATGTACTGCAGTTACTGAAGCCAGTTCCTTTGCTCAAGAG
AGTGTGGGCCTATAAGAATCCTTCTTTGCGTAATTCCAATGCACAACATT
TATATAGTTGTTGTTTAATTATGTTTCTATGAGACTGTAAAGTGTTTTTA
TTTTCTGTATTACCAAATGCAAATAAGTTCGCAGTAAGCCTAGATTGCCC
GTGGTAAAAAAGCTAATTTCTTTCCTAAGTCTGATTTCTGGTGCAATGTT
CTGGGAGCTTTTTTTTAATTGAATCCTGCGGTTGGTGGTCAGAAGTAGGG
GCTTTATATTCCTCCCTCTTCAGTCCTTACACCCGCTTATCCTTTGAAAT
CGTTTTCGGTAATTATCATTTTTTTGGTGGTTGCCCTGGATTTTAAAAAT
GTGTTACCTATTTACTACTCATTTTCTCAACTTA

GTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGAGTGATTACTGATTTGTGTGCCCAAAGATTA
GACTTTCTTTCTGCTAGGTGTGTAACACAAACAAATAATCAGGAAATCAT
GAAAAACAAGAGTGTGATCTCACTCTGAGGTGGTTGCCCAACCAGACACT
GAAGATAGACCTGGTGAGCATAGAGCATAGGCTATATCCTCCTGCCTAAC
TAACTAACTTGTTTAGAAGCCTGATTTATGCCCTTTAAAAAACATTTTGC
AATATAATTTTAAAACTGAGCTCTTGTTGCCCCCTCCTAGTTGAGCAGCT
AATGACAGTTCAGTGCTACTTAGGAAAGGAAGGAGAGGCACATCATTTTG
TACCAGGAGGAGCCTGTATTCCCATGGAGAGTCACAAATGTCCATATGGG
CAGTCTTAGTTGAAACTGGTCAGTTATTAAAAACAAAAGCTATGAGATTT
GGATAGAAATGGGAGATATTTTGGAANAGATTAGATCTATGTAGAGGACA
TTGAGATGGATGTATATCACCAATATAGATTTTAGATGGCAATGTCTGGC
NTGTGACTTCCTACCATTTTATCTCCTCCTTCCTTCCTTTCTTTTTCTTA
TATTCTTATTTCTTTGACCCTTCTTTATCCAATCTTTTTCATTTTTATAT
ATCCCTCTTTGTATCCTTTTTCTTTTTCTTTTTTCTCATTTTTTTTCTAT
TCTTCTTCTATCCATATTCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_n05.b1 MSMg01no426_n05.b1 CHROMAT_FILE:
MSMg01no426_n05.b1 PHD_FILE: MSMg01no426_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:30 2005
         (436 letters)



>mm_chr14_83345123_83345958
          Length = 836

 Score =  820 bits (424), Expect = 0.0
 Identities = 433/436 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcctatgtctgtaattatgacctttgtacagaccttggcaagctgccaggccttcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcctatgtctgtaattatgacctttgtacagaccttggcaagctgccaggccttcact 260

                                                                       
Query: 61  ttgaaaattctgctctggggtacattgattatagtgtagttattaacacttgattatagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaaaattctgctctggggtacattgattatagtgtagttattaacacttgattatagg 320

                                                                       
Query: 121 ttctaagaattgtgtttagaggtttcaatacattatggatcatactgttacaagtacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctaagaattgtgtttagaggtttcaatacattatggatcatactgttacaagtacata 380

                                                                       
Query: 181 ttttttgaatatgagttttcttgaaattctagacagaaacattaaaagctcacatctttg 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttcgaatatgagttttcttgaaattctagacagaaacattaaaagctcacatctttg 440

                                                                       
Query: 241 acacacaattgttgctttcatatagatttttctgtttcataatttcctaagagttgatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacacaattgttgctttcatatagatttttctgtttcataatttcctaagagttgatgt 500

                                                                       
Query: 301 actgcagttactgaagccagttcctttgctcaagagagtgtgggcctataagaatccttc 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgcagttactgaagccagtccctttgctcaagagagtgtgggcctataagaatccttc 560

                                                                       
Query: 361 tttgcgtaattccaatgcacaacatttatatagttgttgtttaattatgtttctatgaga 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 tttgcgtaattccaatgcacaacatttatatagttgttgtttaattatgtttctatgaaa 620

                           
Query: 421 ctgtaaagtgttttta 436
           ||||||||||||||||
Sbjct: 621 ctgtaaagtgttttta 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_n05.g1 MSMg01no426_n05.g1 CHROMAT_FILE:
MSMg01no426_n05.g1 PHD_FILE: MSMg01no426_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:30 2005
         (475 letters)



>mm_chr14_83508979_83509853
          Length = 875

 Score =  839 bits (434), Expect = 0.0
 Identities = 446/450 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagtgattactgatttgtgtgcccaaagattagactttctttctgctaggtgtgtaaca 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 450 agagtgattactgctttgtgtgcccaaagattagactttctttctgctaggtgagtaaca 391

                                                                       
Query: 61  caaacaaataatcaggaaatcatgaaaaacaagagtgtgatctcactctgaggtggttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 caaacaaataatcaggaaatcatgaaaaacaagagtgtgatctcactctgaggtggttgc 331

                                                                       
Query: 121 ccaaccagacactgaagatagacctggtgagcatagagcataggctatatcctcctgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ccaaccagacactgaagatagacctggtgagcatagagcataggctatatcctcctgcct 271

                                                                       
Query: 181 aactaactaacttgtttagaagcctgatttatgccctttaaaaaacattttgcaatataa 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aactaactaacttatttagaagcctgatttatgccctttaaaaaacattttgcaatataa 211

                                                                       
Query: 241 ttttaaaactgagctcttgttgccccctcctagttgagcagctaatgacagttcagtgct 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 210 ttttaaaactgagctcttgttgcccccttctagttgagcagctaatgacagttcagtgct 151

                                                                       
Query: 301 acttaggaaaggaaggagaggcacatcattttgtaccaggaggagcctgtattcccatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 acttaggaaaggaaggagaggcacatcattttgtaccaggaggagcctgtattcccatgg 91

                                                                       
Query: 361 agagtcacaaatgtccatatgggcagtcttagttgaaactggtcagttattaaaaacaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  agagtcacaaatgtccatatgggcagtcttagttgaaactggtcagttattaaaaacaaa 31

                                         
Query: 421 agctatgagatttggatagaaatgggagat 450
           ||||||||||||||||||||||||||||||
Sbjct: 30  agctatgagatttggatagaaatgggagat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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