BAC Information

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BAC

Clone NameMSMg01-427C07
Chromosome14 (Build37)
Map Location 55,303,036 - 55,303,453
singlet/doubletsinglet
Overlap geneAcin1
Upstream geneOTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, LOC667711
Downstream gene1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427C07.T7 (MSMg01no427_c07.b1)MSMg01-427C07.TJ (MSMg01no427_c07.g1)
ACCAG520414AG520415
length751791
length of high quality
(start - end)
418 (80 - 497)178 (77 - 254)
definitionCHROMAT_FILE: MSMg01no427_c07.b1 PHD_FILE: MSMg01no427_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:55 2005CHROMAT_FILE: MSMg01no427_c07.g1 PHD_FILE: MSMg01no427_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATACAAAAGAGGATC
CGCGGAATTCTAACCTAACTCCATAAGGATAAAGACATGGAGTTTAAAAA
AAGAAAAAGAATTTAAAAAATACAGTTTTATTTGAAAGAATTTGATACCT
TATTAGTATCCCCCTAGTTCTAGGACTAACTGCTTAACAATCTGTAGTTT
CTCTTAAACATCTTTAATACTTTGATTACTTAGGACAAGATACTTAACAC
TTGGAGTCCTTTGTTTCTTTACCTGTAATAGGAAGAGTAGTCTGACTTAG
GTCATTGTTTTATAACTACTCTGTTGTTTTGTCTTAGGAAAAAAACTTTC
TTCTAAGAGTTTGTGCATAACTGTTTTTGTTGTTGTTGTTATTGTTGTAA
AGTTGAATCAGAGTATCTCTGTGTAGCCAGAATGGCTGAGCACTCAAGCT
ATTCTATCTTCAGACTCAGGGCAGTCCCCTGCCCAGCTTCCCTAGTGCTG
GTGTAATGGGCTTGTGCTCCATCCCCCAGATTTCTACAAATGTTTTATTT
TGAAGACATTATCGTATAGTTAAAAACAAAATACAAAGTTTCTACACTAT
ATCATCTTGTAGAGCGCTTTTCAGTTTTTAAACCCTTCATTTAGCGTGTC
ACACACTTATTGGATTATGTATTGGTGTGGGCCCTAGAACACTGGATAAG
GTGTTTCCTGTTCCCTATAACTTCATTCTAAACTAGGCCCATCACCTAAG
N
NNACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGGACTTTTCAGAGTGTATATA
AATGCTAGGGCCCCAAGAGGCCCCAGGGTGGTTTGTTGTTTGTTTGTTGG
ATATTTGTTGGGTGACGGTTGGTTACTGTTGGTCGCAGTTTGTTAAGTAG
TTGATTACAAAGAAGAAACAACGTCCGAAGTGATGTGTCTTCAGGTTAAG
GGAGAAGGCTCTGGAGTCAGCTGACCTTGGCCTGCAGCAGTTTATCCTTC
TAGATGTCATTTCCTTCACTTGTATTTTTTTTATATACTTCCTGTGTCAC
AGAGAGTATTGTTTTGTATATGCTCGCTTCAGGGAGTGTCTCTATTATAT
TGTGTGTACCTGTTATACCACCCATGGGCTGGTTGAATAATTTGTGTCTC
TTTTGTTGTTTACTTTTATATCCTTATTTTTCTTTTTGTTTTTTAATCTT
TTTTTTTTCAAATTTCTTACTGTACATTATTTTTTTTTTATTTTTTTTTT
CTCTTTCTCCTTTTTTCTCTTTTTATCTTCTATAATATTCTCTATATTTC
GTTTTTTTTGTCTTTTTTTTTTTTTCGTCTTTTTATTTTCTTCCTTCTTT
GTTTCCTATTCTCTTTTTTTATTTTTTTACTTTTTTTTCCCTTTTTTTTT
CTCTTTCTTTTGCCTTCTTTTTCTCTTTTCTTACTTGCTTCTTGCTCTTT
CTTTTCTCTTCTGTTTCTTTGTCCTCTCCTTTATATCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_c07.b1 MSMg01no427_c07.b1 CHROMAT_FILE:
MSMg01no427_c07.b1 PHD_FILE: MSMg01no427_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:55 2005
         (418 letters)



>mm_chr14_55302963_55303780
          Length = 818

 Score =  770 bits (398), Expect = 0.0
 Identities = 413/418 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaagacatggagtttaaaaaaagaaaaagaatttaaaaaatacagttttatttgaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 taaagacatggagtttaaaaaaagaaaaagaatttaaaaaatacagttttatttgaaaga 432

                                                                       
Query: 61  atttgataccttattagtatccccctagttctaggactaactgcttaacaatctgtagtt 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atttgataccttattagtaaccccctagttctaggactaactgcttaacaatctgtagtt 372

                                                                       
Query: 121 tctcttaaacatctttaatactttgattacttaggacaagatacttaacacttggagtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tctcttaaacatctttaatactttgattacttaggacaagatacttaacacttggagtcc 312

                                                                       
Query: 181 tttgtttctttacctgtaataggaagagtagtctgacttaggtcattgttttataactac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tttgtttctttacctgtaataggaagagtagtctgacttaggtcattgttttataactac 252

                                                                       
Query: 241 tctgttgttttgtcttaggaaaaaaactttcttctaagagtttgtgcataactgtttttg 300
           ||||  | ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 251 tctgccggtttgtcttaggaaaaaaactttcttctaagagtttgtgcataaatgtttttg 192

                                                                       
Query: 301 ttgttgttgttattgttgtaaagttgaatcagagtatctctgtgtagccagaatggctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ttgttgttgttattgttgtaaagttgaatcagagtatctctgtgtagccagaatggctga 132

                                                                     
Query: 361 gcactcaagctattctatcttcagactcagggcagtcccctgcccagcttccctagtg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gcactcaagctattctatcttcagactcagggcagtcccctgcccagcttccctagtg 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)