Query= MSMg01no427_g22.b1 MSMg01no427_g22.b1 CHROMAT_FILE:
MSMg01no427_g22.b1 PHD_FILE: MSMg01no427_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:18 2005
(476 letters)
>mm_chr14_62151385_62152260
Length = 876
Score = 876 bits (453), Expect = 0.0
Identities = 468/473 (98%), Gaps = 1/473 (0%)
Strand = Plus / Minus
Query: 5 gaattctctaatttc-gcatactgctttaagtgatcttagtacatccatctgttatgttt 63
||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 805 gaattctctaatttcagtatactgcttttagtgatcttagtacatccatctgttatgttt 746
Query: 64 ttagatttttttatttatgtctatgtgtatgtgtatatctgcaacatgtaggtacccaaa 123
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 745 ttagatttttttatttatgtctatgtgtatgtgtatatctgcagcatgtaggtacccaaa 686
Query: 124 gtctaaagagtgcatcagatcaccaagctggagttacatgcagttgtgagctgtccagtg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 685 gtctaaagagtgcatcagatcaccaagctggagttacatgcagttgtgagctgtctagtg 626
Query: 184 tgggtcctgacctctgcaagagtagcaagtgcttttaatggctgagccatctgaccaatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgggtcctgacctctgcaagagtagcaagtgcttttaatggctgagccatctgaccaatc 566
Query: 244 ccaaactcttgtttatatttgtaaaagctattttttaaatcatcacattcttttcttttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccaaactcttgtttatatttgtaaaagctattttttaaatcatcacattcttttcttttt 506
Query: 304 ctgatattgtatttattcattcacagtcttatacatgtatgcagtatatatttcttacca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgatattgtatttattcattcacagtcttatacatgtatgcagtatatatttcttacca 446
Query: 364 tttttcttttaattttaatgttataatcacatgttatttattccctcttccctttcctcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttttcttttaattttaatgttataatcacatgttatttattccctcttccctttcctcc 386
Query: 424 catataaccctcctagttctctttcgaattcatggcttctttttttattaata 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catataaccctcctagttctctttcgaattcatggcttctttttttattaata 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_g22.g1 MSMg01no427_g22.g1 CHROMAT_FILE:
MSMg01no427_g22.g1 PHD_FILE: MSMg01no427_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:18 2005
(462 letters)
>mm_chr14_61976835_61977701
Length = 867
Score = 764 bits (395), Expect = 0.0
Identities = 453/487 (93%), Gaps = 25/487 (5%)
Strand = Plus / Plus
Query: 1 tcatctgcctgcctctgcctcccaagtgctgggataa--------ctcgcgcacgcacac 52
|||||||||||||||||||||||||||| |||||||| | ||||| |||||||
Sbjct: 181 tcatctgcctgcctctgcctcccaagtgttgggataatgcgcgcgcgcgcgcgcgcacac 240
Query: 53 acacacacacacacacacacaca------------cacacacacacaccccacacactac 100
||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 241 acacacacacacacacacacacacacgcgcgcgcgcacacacacacacaccacacactac 300
Query: 101 ctgttttactgcctttgttcttcggggggattaggtgtactcaagtggttgcttaaaaat 160
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ctgttttactgcctttgttcttcggggggattaggtgtactcaagtggttgcttgaaaat 360
Query: 161 caactctttacacacaggctttgaggaaaataacggtacacattaactcttaggaaatag 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caactctttacacacaggctttgaggaaaataacggtacacattaactcttaggaaatag 420
Query: 221 ggaatctcatctttgcgcaaacagttggcatctctctcatttagcttgcaatactcagag 280
||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct: 421 ggaatctcatctttgcgcaaacacttggcatcacactcatttagcttgcaatactcagag 480
Query: 281 ctaagtgatggccagctctgtgttttctttgtaagattatggagattagctgcaggtctg 340
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 481 ctaagtgatggccagctctgtgttttctttgtaagattattgagattagctgcaggtctg 540
Query: 341 ttcagatggagactaagtcagattttgtccaaaaaaaaaaaa-----ggtatttaagatt 395
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 541 ttcagatggagactaagtcagattttgtccaaaaaaaaaaaaaaaaaggtatttaagatt 600
Query: 396 atatttttaaaagccgggagggagtaagacaccagaactgcctatgtgcagttgcactgg 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atatttttaaaagccgggagggagtaagacaccagaactgcctatgtgcagttgcactgg 660
Query: 456 cgatttc 462
|||||||
Sbjct: 661 cgatttc 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 867
Length adjustment: 10
Effective length of query: 452
Effective length of database: 857
Effective search space: 387364
Effective search space used: 387364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
