BAC Information

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BAC

Clone NameMSMg01-427H18
Chromosome14 (Build37)
Map Location 78,140,343 - 78,288,387
singlet/doubletdoublet
Overlap geneGm1587, Dnajc15
Upstream geneLOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678
Downstream geneEpsti1, AU021034, Tnfsf11, LOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427H18.T7 (MSMg01no427_h18.b1)MSMg01-427H18.TJ (MSMg01no427_h18.g1)
ACCAG520673AG520674
length765769
length of high quality
(start - end)		548 (76 - 623)549 (81 - 629)
definitionCHROMAT_FILE: MSMg01no427_h18.b1 PHD_FILE: MSMg01no427_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:22 2005CHROMAT_FILE: MSMg01no427_h18.g1 PHD_FILE: MSMg01no427_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,140,343 - 78,140,890)(78,287,844 - 78,288,387)
sequence
NNNTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCTGAATATCCCTATTCACTTACCTATCTATTTAGGGATTT
GATACTCTTAAAGTTCATCTTTAAAAAAATATACATATATGGCAACTCAC
TTTGGCACATAATAAATTAATATATAATATAATATATAACATATAACACA
TAATATATAATTTAGAATATAATACAGTATATAACATAATATATATTATA
CTATGTTATATAATAATATTGTATGCTAAAAGTGAGGTGCCACCAATGTA
GTGGAAAATCAGAAATGCTCCCCAATTTCATAAGCATTTCTGGAACTTGA
ACATCCCAGTCTATTATTCTCTGACTGTCAGACAGCTGGCAGATGCAGAG
TTCTTTTCCTTCAGTATTCCCAGACAGAGATTACTGGACAAACACCACTG
TTAGGTAAACATTGTGTTCGCTACTGGTGGATCAACAAACTTTGGGGAAT
TTAGTTGTTTAAGACAACTGAGAACATTCGAGTTAAACATCCAAGAGCAA
TGGCTGAAAGGTTAGCGTTCCTATTCAAAAGAGGTGTGAGCGAAGGAAAC
AATCAGCAGAAACAAGAACCATAAAATCCCACAGCACTCCTTTTTTAAAT
GGCGTGCTCCTGATATTGTTGCCTGTGTGATTCTAGCCTGCCCAGACAGG
TCAGTATGCAAAGGGCGTTCCACCCGAGTTTCTGATAAACCCCCGAAAAA
TTCCAAATTGATGGG

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCAAGTCCCCCATTTTG
GTGGAAGGAGAGATGGCTCAGGAGGTAACATGCTTGCAATGCAAGAAGAC
CTGAATTCAGATGTCTAGCACCCCTGAGGTTTGCTAGCTGGCCAGGTTGT
CCAATTGGTAAGCTCCCATGAGGAACCATGTCTCAAAATTAAAATAAAGG
GACTGAAAAGATGACTCAGCACTTGTTGAGCAGTCGGGGACTCTCAGCAC
TCACATAACAAGCTGGACGCCCTGTGCATGCCTAAAAAGCTAACATGGAG
AAAGGAGGATTATTATAGTGTCTCCAGGCAATGAAACAGGAGCCCCAGCT
TCAGAAAGCGACCCTGCCTCAAAGGAATAGGTTCAGAGTGTTAGAGGAAG
GCTTTGGATGCCTCTTAGCCTTTGCACATACTCAGGTGTGTGCACTAGTG
CATACATTCACCCAGACACATACACATAAATAAGTCTTTTAAAAGCAAGG
AAGACATCCAGTGTCAGCCTCAGGCTGCTATATGCACGCACGCACACACA
CACACACACACACACACACACACATAAAATCACTATTTTTGAAAATAATG
TTTGTTTCTCAATTTTCACAGTGGTACACACAGCTCACAGCTGTTACTTG
ACTTTTTTACATGCATTTATTTTCATAGTGGCTGGGGAAATTCCTCTGGG
CCCAAAATTTTTAAGGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_h18.b1 MSMg01no427_h18.b1 CHROMAT_FILE:
MSMg01no427_h18.b1 PHD_FILE: MSMg01no427_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:22 2005
         (548 letters)



>mm_chr14_78140143_78141090
          Length = 948

 Score =  982 bits (508), Expect = 0.0
 Identities = 538/548 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttacctatctatttagggatttgatactcttaaagttcatctttaaaaaaatataca 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttacctatctacttagggatttgatactcttaaagttcatctttaaaaaaatataca 260

                                                                       
Query: 61  tatatggcaactcactttggcacataataaattaatatataatataatatataacatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatatggcaactcactttggcacataataaattaatatataatataatatataacatata 320

                                                                       
Query: 121 acacataatatataatttagaatataatacagtatataacataatatatattatactatg 180
           |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 acacataacatataatttagaatataatatagtatataacataatatatattatactatg 380

                                                                       
Query: 181 ttatataataatattgtatgctaaaagtgaggtgccaccaatgtagtggaaaatcagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatataataatattgtatgctaaaagtgaggtgccaccaatgtagtggaaaatcagaaa 440

                                                                       
Query: 241 tgctccccaatttcataagcatttctggaacttgaacatcccagtctattattctctgac 300
           ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tgctccccaatttcaaaagcatttctagaacttgaacatcccagtctattattctctgac 500

                                                                       
Query: 301 tgtcagacagctggcagatgcagagttcttttccttcagtattcccagacagagattact 360
           | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 tatcagacagctggcagatgcagagttcttttccttcagtattcccaaacagagattact 560

                                                                       
Query: 361 ggacaaacaccactgttaggtaaacattgtgttcgctactggtggatcaacaaactttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggacaaacaccactgttaggtaaacattgtgttcgctactggtggatcaacaaactttgg 620

                                                                       
Query: 421 ggaatttagttgtttaagacaactgagaacattcgagttaaacatccaagagcaatggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaatttagttgtttaagacaactgagaacattcgagttaaacatccaagagcaatggct 680

                                                                       
Query: 481 gaaaggttagcgttcctattcaaaagaggtgtgagcgaaggaaacaatcagcagaaacaa 540
           |||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||
Sbjct: 681 gaaaggttagcgttcctattcaaaagaggcatgagcgaagaaaacaatcagcagaaacaa 740

                   
Query: 541 gaaccata 548
           ||||||||
Sbjct: 741 gaaccata 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no427_h18.g1 MSMg01no427_h18.g1 CHROMAT_FILE:
MSMg01no427_h18.g1 PHD_FILE: MSMg01no427_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:22 2005
         (549 letters)



>mm_chr14_78287515_78288463
          Length = 949

 Score = 1036 bits (536), Expect = 0.0
 Identities = 542/544 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcaagtcccccattttggtggaaggagagatggctcaggaggtaacatgcttgcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tcagcaagtcccccattttggtggaaggagagatggctcaggaggtaacatgcttgcaat 814

                                                                       
Query: 61  gcaagaagacctgaattcagatgtctagcacccctgaggtttgctagctggccaggttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gcaagaagacctgaattcagatgtctagcacccctgaggtttgctagctggccaggttgt 754

                                                                       
Query: 121 ccaattggtaagctcccatgaggaaccatgtctcaaaattaaaataaagggactgaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ccaattggtaagctcccatgaggaaccatgtctcaaaattaaaataaagggactgaaaag 694

                                                                       
Query: 181 atgactcagcacttgttgagcagtcggggactctcagcactcacataacaagctggacgc 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 693 atgactcagcacttgttgagcagtcgaggactctcagcactcacataacaagctggacgc 634

                                                                       
Query: 241 cctgtgcatgcctaaaaagctaacatggagaaaggaggattattatagtgtctccaggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cctgtgcatgcctaaaaagctaacatggagaaaggaggattattatagtgtctccaggca 574

                                                                       
Query: 301 atgaaacaggagccccagcttcagaaagcgaccctgcctcaaaggaataggttcagagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 atgaaacaggagccccagcttcagaaagcgaccctgcctcaaaggaataggttcagagtg 514

                                                                       
Query: 361 ttagaggaaggctttggatgcctcttagcctttgcacatactcaggtgtgtgcactagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttagaggaaggctttggatgcctcttagcctttgcacatactcaggtgtgtgcactagtg 454

                                                                       
Query: 421 catacattcacccagacacatacacataaataagtcttttaaaagcaaggaagacatcca 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 453 catacattcacccagacacatacacataaataagtcttttaaaagcaaggaagacagcca 394

                                                                       
Query: 481 gtgtcagcctcaggctgctatatgcacgcacgcacacacacacacacacacacacacaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtgtcagcctcaggctgctatatgcacgcacgcacacacacacacacacacacacacaca 334

               
Query: 541 caca 544
           ||||
Sbjct: 333 caca 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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