BAC Information

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BAC

Clone NameMSMg01-427L12
Chromosome14 (Build37)
Map Location 118,000,397 - 118,182,825
singlet/doubletdoublet
Overlap geneGpc6
Upstream genenone
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427L12.T7 (MSMg01no427_l12.b1)MSMg01-427L12.TJ (MSMg01no427_l12.g1)
ACCAG520851AG520852
length746754
length of high quality
(start - end)		282 (336 - 617)569 (82 - 650)
definitionCHROMAT_FILE: MSMg01no427_l12.b1 PHD_FILE: MSMg01no427_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:40 2005CHROMAT_FILE: MSMg01no427_l12.g1 PHD_FILE: MSMg01no427_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,182,545 - 118,182,825)(118,000,397 - 118,000,965)
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGCA
TCCGCGGAATTCACTCAAGTTACACAGCTTCATGTGTGAATCCCAGCTCC
AGCAGGGGGTTGAGCAAGCAGTTGCAATATTGTCCTGGCCTGACACTTCA
CACACAGTGACGAGGAGAGAAATTGCTTGTAGAATGTGTGTTAGGTGGAT
GCTTTTCAGGCAGGAGGTTGTTGCGGGGAGACTTCCCTGAAGATGTTCTC
CAAGTAGGGATGGGGAAAGGCTGCCTGGGGGCACCAAGTTTCATTACACT
GACAGGATAGGGTTTAGCTAGAAAAAATATCTTTTTAAATCTCACTTCTA
TGAATTCATTTGTTGGAGGGCTTGTCCCTAGTCCTATAACCCAAAGATTG
TTTCTCATTAATAATTTACTTTCATTGCTTTTATACCAAGAGGTAGCTCT
TTCCTAGTTTTATCAATTTTTTTTCCTCAAATGAAAGAATCTGACTTCTT
TAACTACCCCCACAAAATTGTTACTCACAAAACCAGAAACTGGACCCAGA
ATTCTGTGGCTTCTTAATCCATCACCTATATTAAGATGTTTGCCTGAGGC
TCTTACTTTTCTCTCTTTGATGNCTTATCTTCCTTATTTATAACCAATAA
CTGTTATTTTATAGATTATGAATCTTAGCTATTAAATTCCGGATGGGGTC
TCAGAAAAAAAAGGGAGACTCAAGAACGGGAAGCTGTTTCCATGAN

NNNAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTAGAGGTTGAAGATGT
GGGAGTGATATCAGTTAAAACTGTCTCTGTTCGTACTCCCCAGAAAGGCC
TCACCGGACAGCATAAACCAGCAGGCAGATCAGCGACCAGATCGATGTTT
CTAGAAGCTGGGTGATGGCCAAAGAATGGAGTTAAGAACTTAGGAAGCCC
ACCAGAGGAACATCATGTGTGTTTAATGATAGGTGATGGAGAAGAAACTA
CCATTTCTGTAACATCAATCTGTGTGAATATTGATGCTGTGGTCCAGCAA
CCATAACATAGCTACTGTTAATAACAACAGTATATGGGCTTGGTCAGCAT
TGCTATTAGAATTGCTATCATAGTCTTAGATAATTCCATTATAAAGCTCT
ATTAGTTATGGGGCTCTTGATTTAATTTCCCTTAAAGCACACTAAGCACT
CAGGACTTGACTCATTTAAAATATATGTTCAAAGCCTAAAACAAACAAAC
TAAAATTGCAAACCAACAGTCCTGTGTTTATTGTAAGAGAAATTATCCTT
TCTGTTATCCACATATATTAAAATGATTTTCTTCGTAAAACGAAGGAGGG
AAAAAGGTTTTCAAATCTGAGTGGCAAGGAAAATTTTAGAAAATTTAAGA
ATCTTTAAACCTCCATGGAGAAAGGACTTGGAAAAGGTTAACTTAATTGT
TCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_l12.b1 MSMg01no427_l12.b1 CHROMAT_FILE:
MSMg01no427_l12.b1 PHD_FILE: MSMg01no427_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:40 2005
         (282 letters)



>mm_chr14_118182344_118183025
          Length = 682

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   aaatctcacttctatgaattcatttgttggagggcttgtccctagtcctataacccaaag 61
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 482 aaatctcacttctatgaattcatttggtggagggcttgtccctagtcctataacccaaag 423

                                                                       
Query: 62  attgtttctcattaataatttactttcattgcttttataccaagaggtagctctttccta 121
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 422 attgtttctcattaataatttactttcattgcttttatacgaagaggtagctctttccta 363

                                                                       
Query: 122 gttttatcaattttttttcctcaaatgaaagaatctgacttctttaactacccccacaaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gttttatcaattttttttcctcaaatgaaagaatctgacttctttaactacccccacaaa 303

                                                                       
Query: 182 attgttactcacaaaaccagaaactggacccagaattctgtggcttcttaatccatcacc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 attgttactcacaaaaccagaaactggacccagaattctgtggcttcttaatccatcacc 243

                                                    
Query: 242 tatattaagatgtttgcctgaggctcttacttttctctctt 282
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tatattaagatgtttgcctgaggctcttacttttctctctt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no427_l12.g1 MSMg01no427_l12.g1 CHROMAT_FILE:
MSMg01no427_l12.g1 PHD_FILE: MSMg01no427_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:40 2005
         (569 letters)



>mm_chr14_118000197_118001165
          Length = 969

 Score = 1077 bits (557), Expect = 0.0
 Identities = 566/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtagaggttgaagatgtgggagtgatatcagttaaaactgtctctgttcgtactcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtagaggttgaagatgtgggagtgatatcagttaaaactgtctctgttcgtactcccc 260

                                                                       
Query: 61  agaaaggcctcaccggacagcataaaccagcaggcagatcagcgaccagatcgatgtttc 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaggcctcaccagacagcataaaccagcaggcagatcagcgaccagatcgatgtttc 320

                                                                       
Query: 121 tagaagctgggtgatggccaaagaatggagttaagaacttaggaagcccaccagaggaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaagctgggtgatggccaaagaatggagttaagaacttaggaagcccaccagaggaac 380

                                                                       
Query: 181 atcatgtgtgtttaatgataggtgatggagaagaaactaccatttctgtaacatcaatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcatgtgtgtttaatgataggtgatggagaagaaactaccatttctgtaacatcaatct 440

                                                                       
Query: 241 gtgtgaatattgatgctgtggtccagcaaccataacatagctactgttaataacaacagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgaatattgatgctgtggtccagcaaccataacatagctactgttaataacaacagt 500

                                                                       
Query: 301 atatgggcttggtcagcattgctattagaattgctatcatagtcttagataattccatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatgggcttggtcagcattgctattagaattgctatcatagtcttagataattccatta 560

                                                                       
Query: 361 taaagctctattagttatggggctcttgatttaatttcccttaaagcacactaagcactc 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaagctctattagttatggggctcttgatttaatttcccttaaagcacactaagcactc 620

                                                                       
Query: 421 aggacttgactcatttaaaatatatgttcaaagcctaaaacaaacaaactaaaattgcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggacttgactcatttaaaatatatgttcaaagcctaaaacaaacaaactaaaattgcaa 680

                                                                       
Query: 481 accaacagtcctgtgtttattgtaagagaaattatcctttctgttatccacatatattaa 540
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 accaacagtcctgtgtttattgtaagagaaattatcctttcggttatccacatatattaa 740

                                        
Query: 541 aatgattttcttcgtaaaacgaaggaggg 569
           |||||||||||||||||||||||||||||
Sbjct: 741 aatgattttcttcgtaaaacgaaggaggg 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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