BAC Information

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BAC

Clone NameMSMg01-427O04
Chromosome14 (Build37)
Map Location 75,037,080 - 75,037,572
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043734, EG629578, LOC629583
Downstream geneHtr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427O04.T7 (MSMg01no427_o04.b1)MSMg01-427O04.TJ (MSMg01no427_o04.g1)
ACCAG520979AG520980
length747749
length of high quality
(start - end)
550 (79 - 628)543 (79 - 621)
definitionCHROMAT_FILE: MSMg01no427_o04.b1 PHD_FILE: MSMg01no427_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:53 2005CHROMAT_FILE: MSMg01no427_o04.g1 PHD_FILE: MSMg01no427_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAGAG
CCGCGGAATTCTGCTTTTGCCAAATTTCCAGTTACCAATGGACAATGGCT
GCCTTATTATTGCTGGAAGAATCAACAGCTCAAATCAATTTATTATTTGA
GGCAGAATTCTCAAATGATTGGGCTTTACATATGGGGGTGCCTTTTATAA
TTCATTTGTTTTGAATAGGCCAACAGGAAATGGTTGCTTAAAGTTGCTTT
AAAAATTGCTGGAGTAGCGTTGGAAGCCCTTGCTGAACCTCTTTTGTTTC
CCCTCCCATTCTATAGCCACTTGGTTCCTGATTTATTAATGCTTTATAGT
TGTTGAAATATGTGAAGAAAAAGCTCTGTGAGTAAAGAAATCTAGAACAT
ATTGCATCTTTATAGCCTTCTCTTAAAAATACACTGTGTGCATTAGCATT
TTAAAGGCTATGGGGAGATGCTGTAATAAGGAAATTTGCTTCTATTTATC
TCTTTTCTCCCTTCTTCCAAAACATTCACTGTAGGTCAATTTTATTTTCT
TTCAAAGAATTGAGTTATATTTTGCATTCATCAAAATATAAAGGCCTTCA
ATATGTAATTTAGTGAGTTTTGAAAAATGTATACGCCCACACAACCACCA
CCCAAATCAGCAAGCCTACCATTTCCTTATTTCCATTACTTTTGAAAGGC
TCTTCATATCCATGGTTGACCTCTGGCTTAGCCGGAGAATGCTGGTN
NCCCGAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAAAGAAACTGTGTCTGCA
AAGATGGGTTGATCGGAACCACAGTGATGTGGAGGGATGGAATGCTGCAG
GTCCAGTGCCAATACATTACCTTATCTTGGGCTAGTTTTTATCTCCTTGT
CCATCTCTGTGTCAGAACTAAGATCCTGTGACTAATAGATAAAAGTCTTC
TGCAATCTATTGACTTAGCTGATCACTAATTTCCATTAACACAAAAGCTA
AGAATGTCATCAGATAGCATCTAAGGCGTATAGAAGAGATTCTCCCATCT
TGCTGTCTGTAACTACCTCTTTGATGTTTTATTAATGTATTTTTAATTGC
CTTGATTTGTGACTTTATTGATCTGCTACCATGAGACATCGTCAAACTGC
TTCCACATGGGGACATGGAACTTGAATAACTTAGGTCCATGTTTCCCAGG
TCTTAGTAACTAAGACTTGGCTCTAGAATAAATGCTTTCTTAGTCCTTGG
AGGTGAGAGCTTCTGTTTGCATTGCGACATGATTTTTCATTCTTTCTGAT
ATAAAATCTTTTCCTTAAATACTGAATTGCTATTCTTAATAAGGCTGTCA
TTTTTTATTTACAAGCTATATAATTCTGTCTTCCTGGAGACCTCTCAACA
CTTACCGACCTTTTGACTTCCCTGGGGATTCACTTGTTAGATAATCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_o04.b1 MSMg01no427_o04.b1 CHROMAT_FILE:
MSMg01no427_o04.b1 PHD_FILE: MSMg01no427_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:53 2005
         (550 letters)



>mm_chr14_75037080_75038029
          Length = 950

 Score =  907 bits (469), Expect = 0.0
 Identities = 487/493 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttaccaatggacaatggctgccttattattgctggaagaatcaacagctcaaatcaa 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 493 cagttaccaatggacaatggctgccttattactgctggaagaatcaacagctcaaatcaa 434

                                                                       
Query: 61  tttattatttgaggcagaattctcaaatgattgggctttacatatgggggtgccttttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tttattatttgaggcagaattctcaaatgattgggctttacatatgggggtgccttttat 374

                                                                       
Query: 121 aattcatttgttttgaataggccaacaggaaatggttgcttaaagttgctttaaaaattg 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 373 aattcatttgttttgaataggccaacaggaaatggttgattaaagttgctttaaaaattg 314

                                                                       
Query: 181 ctggagtagcgttggaagcccttgctgaacctcttttgtttcccctcccattctatagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctggagtagcgttggaagcccttgctgaacctcttttgtttcccctcccattctatagcc 254

                                                                       
Query: 241 acttggttcctgatttattaatgctttatagttgttgaaatatgtgaagaaaaagctctg 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 253 acttggttcctgaaatattaatgctttatagttgttgaaatatgtgaagaaaaagttctg 194

                                                                       
Query: 301 tgagtaaagaaatctagaacatattgcatctttatagccttctcttaaaaatacactgtg 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tgagtaaataaatctagaacatattgcatctttatagccttctcttaaaaatacactgtg 134

                                                                       
Query: 361 tgcattagcattttaaaggctatggggagatgctgtaataaggaaatttgcttctattta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tgcattagcattttaaaggctatggggagatgctgtaataaggaaatttgcttctattta 74

                                                                       
Query: 421 tctcttttctcccttcttccaaaacattcactgtaggtcaattttattttctttcaaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  tctcttttctcccttcttccaaaacattcactgtaggtcaattttattttctttcaaaga 14

                        
Query: 481 attgagttatatt 493
           |||||||||||||
Sbjct: 13  attgagttatatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)