BAC Information

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BAC

Clone NameMSMg01-428E11
Chromosome14 (Build37)
Map Location 83,992,803 - 83,993,188
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773
Downstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428E11.T7 (MSMg01no428_e11.b1)MSMg01-428E11.TJ (MSMg01no428_e11.g1)
ACCAG521281AG521282
length757775
length of high quality
(start - end)
240 (75 - 314)385 (77 - 461)
definitionCHROMAT_FILE: MSMg01no428_e11.b1 PHD_FILE: MSMg01no428_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:25 2005CHROMAT_FILE: MSMg01no428_e11.g1 PHD_FILE: MSMg01no428_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGCATTACCTTCTACACCAAAGTACAGATCCTGGAAACAGAAAT
TAAACAGACACATGGACTATAACAGAAGACCAACGGAATAGAATTGAAGA
CCCAGAAATGAACCCACACACCTATGGTCTCTTGATCTTTGACAAGGGAG
CAAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTTG
TTTAACTGGTGGTTATCATGTAGAAGAATGCTCATTGATCCATTCCTATC
TCCTTGACTAAGGTTTTACTATTTGGATAAAAAAACACCACATAAAACCA
GAAACACTGATACTTATAGAGGAGAAAGTAGAGAAAACCCTCGAAGATAT
GGGTATAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAA
GACCGAGAATCTATCAATGGGACCTCATAATATTGCAAAGTTTCTGCTAG
GCTTAAGACATCATTCATTATACAAATAGGACACCTACCAGATTGGGAAC
GGACCTTTTACCTATCCTAATACCGATTGGGGACTAATATTCTTCACACA
TTATGATTTCCTGAAGGTGGGACTCCATATAATTCATAAACCTCCCTTTT
TTTTTGTTTTTTTTCACCCTTCATTTCGCGATTTTTTCCTAATCGCTATT
TTCTCTGGCCTGAATTAACCCCTCCCTCCCTATGTTTTTTTTCCCCTATT
CTTTACC
CTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCCACAGAAATATTTTAGAAA
ACTTCAGGGAATTACTGGTAACATATTTTTTTGACTATAGGATTTATTAG
TATTTTTATTTCTGAATAGTCCAATTATTTTCATCCTCTACCCCTATGTT
ACCATTTCATTTAGGCCTTTGATCTGGAGTGTGATAATCTTTATAATAAG
TTTATAGAGAAATAATAAGACTAACTAAATTCAGAAATACAACAAACAGC
ATTTAATGTTGCACTGATTTTAAAATCCCACCAGCCCAACACATTAAAAA
AAATACATGTTTTGTGAAGCTTTTGGAGAAATTTGCATGTAAACTTTAAC
ATGTGCTAAAATACCATGTGTTTAATTCAAAAATTAAATTTCAATTTTGA
GATGGATGGTTGGGCCCATCCCTCAGCTGGGGGGCATGTCTATCTACTGG
AGGTGGTCCCTTCAGCTCCTATCTTCCTATTTGAATGGGACAAAATTTAG
CCCTGATAAAATTATCCTATTCCATTTTGTTATAGACTGACAACCCCATT
GCTTTACATTATATTGCACTCCTCTGTATTCCCAATATTCATGTTATAGA
TTTCTCCTATTCTCCTTCTTTATGTTTATCTCTTTTACCTTCGAAATATT
ACCAGCTTTCCCAAGTGTACGCCCTTTCTTCGTGGTATCGTCTTCTTATT
TCTCCCTCTTTTTTTGTCCTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_e11.g1 MSMg01no428_e11.g1 CHROMAT_FILE:
MSMg01no428_e11.g1 PHD_FILE: MSMg01no428_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:25 2005
         (385 letters)



>mm_chr14_83992603_83993388
          Length = 786

 Score =  704 bits (364), Expect = 0.0
 Identities = 380/390 (97%), Gaps = 9/390 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgccacagaaatattttagaaaacttcagggaattactggtaacatatttttttgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgccacagaaatattttagaaaacttcagggaattactggtaacatatttttttgact 260

                                                                       
Query: 61  ataggatttattagtatttttatttctgaatagtccaattattttcatcctctaccccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataggatttattagtatttttatttctgaatagtccaattattttcatcctctaccccta 320

                                                                       
Query: 121 tgttaccatttcatttaggcctttgatctggagtgtgataatctttataataagtttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttaccatttcatttaggcctttgatctggagtgtgataatctttataataagtttata 380

                                                                       
Query: 181 gagaaataataagactaactaaattcagaaatacaacaaacagcatttaatgttgcactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaaataataagactaactaaattcagaaatacaacaaacagcatttaatgttgcactg 440

                                                                       
Query: 241 attttaaaa-----tcccaccagcccaacacattaaaaaaaatacatgttttgtgaagct 295
           |    ||||     ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 a----aaaaaaaaatcccaccagcccaacacattaaaaaaaatacatgttttgtgaagct 496

                                                                       
Query: 296 tttggagaaatttgcatgtaaactttaacatgtgctaaaataccatgtgtttaattcaaa 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttggagaaatttgcatgtaaactttaacatgtgctaaaataccatgtgtttaattcaaa 556

                                         
Query: 356 aattaaatttcaattttgagatggatggtt 385
           |||||||||||||||||||||||| |||||
Sbjct: 557 aattaaatttcaattttgagatgggtggtt 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 786
Length adjustment: 9
Effective length of query: 376
Effective length of database: 777
Effective search space:   292152
Effective search space used:   292152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)