BAC Information

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BAC

Clone NameMSMg01-429K22
Chromosome14 (Build37)
Map Location 53,065,991 - 53,066,203
singlet/doubletsinglet
Overlap genenone
Upstream geneEG638695, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242
Downstream geneOlfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429K22.T7 (MSMg01no429_k22.b1)MSMg01-429K22.TJ (MSMg01no429_k22.g1)
ACCAG522353AG522354
length762558
length of high quality
(start - end)		488 (63 - 550)210 (43 - 252)
definitionCHROMAT_FILE: MSMg01no429_k22.b1 PHD_FILE: MSMg01no429_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:14 2005CHROMAT_FILE: MSMg01no429_k22.g1 PHD_FILE: MSMg01no429_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTGTCGCTATACGACTCCTATAGTCCCAGAATCCGCGGAATTCTGGACG
ATATTCCCGACAGTCTATCAGAAGTAAAGCAGGGAGAAAGAGTAAGAACA
AAGAGGAAACATGGCACACCAATTAAGTATACAGGCCTTTCCACGGGTCT
TGAACCCGAGGAAAAGTTAAGGTCAGGGAAAAATACCTGGGTAGAGATTG
AAAGGAAAGAGGAGAAAAATGAGAGAGAAAAGTACCAGCCAGATAAAATG
CTAGCTAATCAGTCAAGGAAAAAGCCAAAAGCGGCTGGCGAAGGCCAGCA
TGCTGCTCGGCCTCCTGGCAGTCAGCTTCAAGGTCATAGTGCACCTCCGC
CCTATGCGGAGCCCCCACCCTGCGTAATGTGTCAGCCCTGTGCAGAGAGA
CAATGGACAGAGAGGCAATGCGCAGACTCGTTCATTCCCAGAGAGAAACA
AAGGAAAATGCAGCAGGCATTTCCGGTCTTTGAAGGAGCCGAACAGTGGT
GGCACACACTGTTAATCCCAGCACTTGGGAGACAGAGGCAGGCTCTTGCA
GCCTACAAGGTCTTATTGTCCACCCTGGAGTTGTAGATCAGGATTATAAA
GGGGAACTTTCCGTTCTTTGGTCTTGTCCCTCCAGGTGTCTTTTCCTTAT
CCACAAGGGTACGAAATAGCTCCACTAATAATTTTTGCCCAAGCCAACAT
GGGCGGTTTTCCCTTCCTCCTGGGCATCCCTGAAGGCCGCCCGAAGGTAT
ATGTTCTTACTG

AATGGAGCTGGGGCGCTGCTTCATTTAGGACTATAGATCCGCGAATTCTT
TCCTTCCCCCTTATCCATCTCTCTTCTTCCATTTCTTCTGCCGAGACAAG
CAGAGGGCCTTGGTTTGTTAAGTGAATGCTTGACCACAGGGCTACACTGC
AGACCCAAAGAGGCATTTCTTAATTTTTACTCTAATTTGAATTTATTTGT
TTTTAATTTAACAGTCTCATTTTGCAAGGCACTAAGTCTAACCTTTTCTG
ATTGAAGCTCNNNNATNNNNNTAAAAGNNGTTTGAGAAAGGNAAAAAAAA
CCCCTTTTTCCCAAAAACAGCTGTTCTCCGCNACCCCCCCTTCCTCCCTT
ATAGTCCCGACCCCCTTTCGCCCTCCCCCCCCTTTCGCTGTCTCTCCGTT
TCCCTCCGCCCCTTGTTTNTGGCCCCTTAATCTTTTCAATTTTTTCCCCC
CCCCTTTTTCTTTCCCCCCCCCCTTTTCCTTTTTCCTCCCACTTTTTTTC
TTCTCTTCCCCTATCCCCTCCCCCCTTTTCCCTTCACCCCTTCCTTTTCC
CCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_k22.g1 MSMg01no429_k22.g1 CHROMAT_FILE:
MSMg01no429_k22.g1 PHD_FILE: MSMg01no429_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:14 2005
         (210 letters)



>mm_chr14_53065791_53066405
          Length = 615

 Score =  377 bits (195), Expect = e-109
 Identities = 208/213 (97%), Gaps = 5/213 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattctttccttcccccttatccatctctcttcttccatttcttctgccgag-a-caag 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 201 gaattctttccttcccccttatccatctctcttcttccatttcttctgccgagtatcaag 260

                                                                       
Query: 59  cagagggccttg-gtttgttaagtgaatgcttgaccacagggctacactgcagacccaaa 117
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagggccttgtgtttgttaagtgaatgcttgaccacagggctacactgcagacccaaa 320

                                                                       
Query: 118 gaggcatttcttaatttttactc--taatttgaatttatttgtttttaatttaacagtct 175
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggcatttcttaatttttactcaataatttgaatttatttgtttttaatttaacagtct 380

                                            
Query: 176 cattttgcaaggcactaagtctaaccttttctg 208
           |||||||||||||||||||||||||||||||||
Sbjct: 381 cattttgcaaggcactaagtctaaccttttctg 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 615
Length adjustment: 9
Effective length of query: 201
Effective length of database: 606
Effective search space:   121806
Effective search space used:   121806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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