BAC Information

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BAC

Clone NameMSMg01-429L14
Chromosome14 (Build37)
Map Location 11,718,142 - 11,877,416
singlet/doubletdoublet
Overlap geneFhit, LOC100041974
Upstream geneLOC100042415
Downstream geneLOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, Ptprg, LOC100042441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429L14.T7 (MSMg01no429_l14.b1)MSMg01-429L14.TJ (MSMg01no429_l14.g1)
ACCAG522385AG522386
length728821
length of high quality
(start - end)		530 (61 - 590)166 (74 - 239)
definitionCHROMAT_FILE: MSMg01no429_l14.b1 PHD_FILE: MSMg01no429_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:18 2005CHROMAT_FILE: MSMg01no429_l14.g1 PHD_FILE: MSMg01no429_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,876,887 - 11,877,416)(11,718,142 - 11,718,304)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GTGTTGCTAAGGAAATTCAGAAGCAAGGTATCATTTACTGAACAACCAAA
TCTCTGGTTTTCCAAGAAATATAACATTTCTCATACTTACGACTCTAATT
GCTTCTTAGCATCTTGATGAAATGGAAAGGCATAGATAGGCGCAGAGTAG
CCAGGATATCCATCACTTAAGGCAGTCACCTCCTTATTCCATGTACTTGC
TTTTGGTCTTGCTCATCTATTCCCAAAGGCATCAAGAGCTTTTAATGTGG
CTGAGCTCATGTGCACTCTGCAGCTGCCATGCAGTCCTGGTCCTTTATCC
CCATGCAATCTCTCTATTCGAAGCAGTGTTGCTATCTCAGCTCACACAGA
GCCAGGGCCCAAACAAGCTTAAAAAGACGGATTGTGTTTAGATACCACAT
CACCTGTCAGTTTCCTCACTTACTGATAACCATAATTGTTTCAACATTGG
CAGCCTCTTATTTAGCAATGACTGCTTGCTCATTTGCTTGTCCTGGATTG
AGACTGTCATGTCACATGACACAACATGTCACATAGAAACCCACACAACA
GACCTGAAAAACACAAGGGCAGCAGAGATTCCCAGATCAATATTTGATTG
TTGAATGTCACAGCGTTTTTTTAATTCCAGGGCATTGTTTATTCACAGTT
ACTGAGTGATGTGGTATTCTGAGGAACN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATACCTATAATTATTTCTTAATTTTC
TAAGGTAACATGGCAGTTTTCAGGAAAATAGACAAAACTAGAAATCAGTA
TGTAAGCAAAATAAGCAAGATTCAGAAAATACTAATCTGTTCTTTTTCTC
CTGTGCAGACTCTAGTGGTGTGTGTGTGTGTGTGTGCGTGTGTGCGTGTG
TCTTTTNCTTTTTTTCTCTCTTTCCCCCCCTTCTTTTTCCCGCCTTCCTT
TCTTCCGCCGCCCTCCTTTTTTTTTTTTTCCCCTGGGGTCCGCCTTCGGC
TNTTCCCCCCCCTTTTTTTTTTCTCTCCCCCCCCGGTCGGGGGGGGTTTT
CCCCCTTCCCTTTCCTTTTCCCTTCTCCCCCTGGCCGCCCCCCTTCCGTT
TCTCCCCCTCCCTTCTCCCTTCCCCCCCCCTGCTTTTTCCCTTTTGCTTC
TCGCCCTGTTCTCCCTCCCCCCCCCCCCGCTCCTNCCCTTTCCCCCTGCC
TTTCCCTCGTTCCCTTTCCTCCCCCCCCTTATCCCTTCCCCCTCCTTCCC
CTGTTACCCCTCTTTTGTTTCTCTTCCCTTTCTTTTTTCCCCATACCTCA
AACTTTCTCCCCCTTTCTCTCTTTTTCTTACTTTTTCCGCGCATTTTCCT
TTGACTTCCCTCATCTCCCCCTCTCGCTCTTTTTTTCTTCCCTTCTTTTT
TTTTCCCCCCCTCCCTTTCTTTCTCACCATTTTACCTTCCCTTTTTTGCT
TTCTTCCCCCCCTCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_l14.b1 MSMg01no429_l14.b1 CHROMAT_FILE:
MSMg01no429_l14.b1 PHD_FILE: MSMg01no429_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:18 2005
         (530 letters)



>mm_chr14_11876687_11877616
          Length = 930

 Score =  994 bits (514), Expect = 0.0
 Identities = 526/530 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaaattcagaagcaaggtatcatttactgaacaaccaaatctctggttttccaagaaat 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ggaaattaagaagcaaggtatcatttactgaacaaccaaatctctggttttccaagaaat 671

                                                                       
Query: 61  ataacatttctcatacttacgactctaattgcttcttagcatcttgatgaaatggaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ataacatttctcatacttacgactctaattgcttcttagcatcttgatgaaatggaaagg 611

                                                                       
Query: 121 catagataggcgcagagtagccaggatatccatcacttaaggcagtcacctccttattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 catagataggcgcagagtagccaggatatccatcacttaaggcagtcacctccttattcc 551

                                                                       
Query: 181 atgtacttgcttttggtcttgctcatctattcccaaaggcatcaagagcttttaatgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atgtacttgcttttggtcttgctcatctattcccaaaggcatcaagagcttttaatgtgg 491

                                                                       
Query: 241 ctgagctcatgtgcactctgcagctgccatgcagtcctggtcctttatccccatgcaatc 300
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctgagctcaagtgcactgtgcagctgccatgcagtcctggtcctttatccccatgcaatc 431

                                                                       
Query: 301 tctctattcgaagcagtgttgctatctcagctcacacagagccagggcccaaacaagctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tctctattcgaagcagtgttgctatctcagctcacacagagccagggcccaaacaagctt 371

                                                                       
Query: 361 aaaaagacggattgtgtttagataccacatcacctgtcagtttcctcacttactgataac 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaagacggattgcgtttagataccacatcacctgtcagtttcctcacttactgataac 311

                                                                       
Query: 421 cataattgtttcaacattggcagcctcttatttagcaatgactgcttgctcatttgcttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cataattgtttcaacattggcagcctcttatttagcaatgactgcttgctcatttgcttg 251

                                                             
Query: 481 tcctggattgagactgtcatgtcacatgacacaacatgtcacatagaaac 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tcctggattgagactgtcatgtcacatgacacaacatgtcacatagaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no429_l14.g1 MSMg01no429_l14.g1 CHROMAT_FILE:
MSMg01no429_l14.g1 PHD_FILE: MSMg01no429_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:18 2005
         (166 letters)



>mm_chr14_11717942_11718507
          Length = 566

 Score =  315 bits (163), Expect = 7e-91
 Identities = 163/163 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacctataattatttcttaattttctaaggtaacatggcagttttcaggaaaatagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacctataattatttcttaattttctaaggtaacatggcagttttcaggaaaatagac 260

                                                                       
Query: 61  aaaactagaaatcagtatgtaagcaaaataagcaagattcagaaaatactaatctgttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaactagaaatcagtatgtaagcaaaataagcaagattcagaaaatactaatctgttct 320

                                                      
Query: 121 ttttctcctgtgcagactctagtggtgtgtgtgtgtgtgtgtg 163
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttctcctgtgcagactctagtggtgtgtgtgtgtgtgtgtg 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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