BAC Information

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BAC

Clone NameMSMg01-429N01
Chromosome14 (Build37)
Map Location 14,505,114 - 14,505,639
singlet/doubletsinglet
Overlap geneA430083B19Rik
Upstream geneCadps, EG432822, LOC100042022, LOC100042026, EG328354, Synpr
Downstream geneEG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429N01.T7 (MSMg01no429_n01.b1)MSMg01-429N01.TJ (MSMg01no429_n01.g1)
ACCAG522455AG522456
length750716
length of high quality
(start - end)
459 (27 - 485)496 (77 - 572)
definitionCHROMAT_FILE: MSMg01no429_n01.b1 PHD_FILE: MSMg01no429_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:25 2005CHROMAT_FILE: MSMg01no429_n01.g1 PHD_FILE: MSMg01no429_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTTTGTT
TAGCTCTGAGCCCCATATTTAATGGGGTTATTTGAATTTCTGGAGTCCAG
CTTCTTGAGCTCTTTGTAGATATTGGATATTAGTCCCCTATCAGATGTAG
GATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTG
AGGGTGTCTTTTGCCTTACAGAAGCTTTGCAAGTTTATGAGGTCCCATTT
TTCAATTCTTGATCTTACAATCGCAAGCCCTTGCTGTTCTGTTTAGGAAA
ATTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCTACTTCCTCCTGTAT
TAATTTCAGTGTCTCTGGTCTTATGTGGAATTCTTTGATCCACTTAGACT
TGACCTTAGTACGAGGAGATAGGAATGGATTAATGCGCATTCTTTTTTTT
TTTTTCGGTTTTTATTTTTATTTTTTTTCCATTTTTTATTAGGTATTTAG
CCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCAT
CCCCACTCCCCTGCCCACCCAATCCCCCTTTTTGGCCCTGGAGTTCCCCT
GTACCGGGGTATATATAGGTTGCACGTCCTATGGGTCCTCTCTTTTCCTG
GACGGCCTGACAAACCATCCCTTGACCAATCATCGACCCACAGTCCTATA
GTCCCCGGGCATATGGCTCACTTTCCCCTCGCTTTCTTCCCCTTTCCCCC

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTATTTTAATTTTTTCATCTGTG
ACAGCTTCACTCCATGTAGCCATGTAGTAACATGGAATGATTAAAGCCCC
AGCATCTACAAGTGGGTTCCTATAGTTAAGAAGTACTTTTGCCTTCCATC
TTTGTTCCTTCCCGAGTTGAAGGAACCGACGTCACAGGGCCATATAAGAG
CCAGGAATATGCAGATTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGCT
TTGTTTTGTTTTTTGCTGTGTGGCAAGTACTTGCAAGGACATCTGTTGAC
AACAATAATTTAAGTCATGTATTGCTTTATGCAGACATCAGTGTCCAAAC
TTGAAAATCACTTTATTTCTTTTATTTTATTGGCAGTGTTTCAATATCTA
AGCAACTGGCTTCAATAAAAGGTAAGCCATGGAAGGGTTGACATGTATGT
CTTTCCTGCTCCATAACAGCAGGCCAAGAGTTAAAATTAATAAGATCAAG
AATGACCAAGGTGTAAGATAAAACATCAAACAAGAATGCCCAAGATCTGG
ATAAAGCATCAAGCATTAATGAAAGCTTTTCTCTCCATGCTATTTGGACT
TACGCTCTTTGTGTGGTCAGGGGCTAGTGATGCACGCGTGATACTCTTCC
CCCTCTAATTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_n01.g1 MSMg01no429_n01.g1 CHROMAT_FILE:
MSMg01no429_n01.g1 PHD_FILE: MSMg01no429_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:25 2005
         (496 letters)



>mm_chr14_14504944_14505839
          Length = 896

 Score =  833 bits (431), Expect = 0.0
 Identities = 487/531 (91%), Gaps = 40/531 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   attattttaattttttcatctgtgacagcttcactccatgtagccatgtagtaacatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 attattttaattttttcatctgtgacagcttcactccatgtagccatgtagtaacatgga 230

                                                                       
Query: 61  atgattaaagccccagcatctacaagtgggttcctatagttaagaagtacttttgccttc 120
           ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 231 atgatgaaagccccagcatctacaagtggcttcctatagttaagaagtacttttgccttc 290

                                                                       
Query: 121 catctt-----------------------------------tgttccttcccgagttgaa 145
           ||||||                                   |||||||||||||||||||
Sbjct: 291 catcttcctaggcacagaaaagctcacagtaaagtgttctttgttccttcccgagttgaa 350

                                                                       
Query: 146 ggaaccgacgtcacagggccatataagagccaggaatatgcagattgttttgttttgttt 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ggaaccgacgtcacagggccatataagagccaggaatatgcagattgttttgttttgttt 410

                                                                       
Query: 206 tgttttgttttgttttgctttgttttgttttttgctgtgtggcaagtacttgcaaggaca 265
           ||||||||||||     |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 411 tgttttgttttg-----ctttgtttcgttttttgctgtgtggcaagtacttgcaaggaca 465

                                                                       
Query: 266 tctgttgacaacaataatttaagtcatgtattgctttatgcagacatcagtgtccaaact 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tctgttgacaacaataatttaagtcatgtattgctttatgcagacatcagtgtccaaact 525

                                                                       
Query: 326 tgaaaatcactttatttcttttattttattggcagtgtttcaatatctaagcaactggct 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tgaaaatcactttatttcttttattttattggcagtgtttcaatatctaagcaactggct 585

                                                                       
Query: 386 tcaataaaaggtaagccatggaagggttgacatgtatgtctttcctgctccataacagca 445
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 586 tcaataaaaggtaagccatggaagggttgacgtgtatgtctttcctgctccataacagca 645

                                                              
Query: 446 ggccaagagttaaaattaataagatcaagaatgaccaaggtgtaagataaa 496
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ggccaagagttaaaattaataagatcaagaatgaccaaggtgtaagataaa 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)