BAC Information

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BAC

Clone NameMSMg01-430O10
Chromosome14 (Build37)
Map Location 31,378,084 - 31,378,529
singlet/doubletsinglet
Overlap geneTkt
Upstream geneCacna2d3, EG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a
Downstream genePrkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430O10.T7 (MSMg01no430_o10.b1)MSMg01-430O10.TJ (MSMg01no430_o10.g1)
ACCAG523284AG523285
length755770
length of high quality
(start - end)
249 (76 - 324)446 (81 - 526)
definitionCHROMAT_FILE: MSMg01no430_o10.b1 PHD_FILE: MSMg01no430_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:59 2005CHROMAT_FILE: MSMg01no430_o10.g1 PHD_FILE: MSMg01no430_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTAAAATACCAAAGAAAATCTCAGGTCACAGATCAGGAGA
ATTGCTAAAATGGTCATAAAAACACCATCTACAGATTCAATGTACTCAAC
ATCCAGAGTCCAACGGCACTCTTCACAGAACTTTAAACAAACTTAAAATG
CATACGGAAGCCCAAAAGTCTCAATAAGGCCAAAGCAATCCTAAACAAAA
CCAGCAATGCTAGAAGCACAACACTTCAAAATATCCTACAGAGTCATTCT
AACAACATGATACTGATGCAAAAACTTACTCACAGAGAAATAGAATAAAA
TCTAAACCATACACCTATGTCCACCTAGTTTAAGAGAGGTGCCAAAAACA
TGCTTGTTAACAAACAGAGCTGAGGCAAATCCATTTCCACACACAGGAGA
TCTAAACTACATCCCTCTCAACCCAAACAAAAATCAGCTCAAATGGATCA
AAACTCCTAATGTAACATCTGCAACTCTAAAACTGCTAGAGGAAAAGGTT
GGAAAATACTTCAAAATGGAAACCTAGGCAAAGACGTTCTGAATATATGA
CTCCATTAGCCCTGGACATAATAGCTTAAGTTAACTTATGCGACTGTATC
CCATTTCGAAGCTTCTACCCAGAAAATAAAAAAGCCCGAATACACGTATA
GCCCATAAAACGTGAGAAAAACTTTTGCTAACTATTTCTTCCCCACGGAA
TTAAG
NNTTCGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTCAAGAAGGTCACTGAG
TTCAGGGCCCTGCACCAGCTATGGCGCTGCTACCTCACCTCCAGACCCTC
ACCTCTTCTGGGACTCTCAGAACCAGTCCCCTGGCTCTAGCCCCACCCTT
CCATGACAAAACTTGTGTTCTCTGAGTGCCGTGTCCTGATTTCATGCTCG
TACCTCGCCGCTATGCTTTGAGAAGACCACACTTGCCTGTATTGAGAGGA
AGCCCCATGGGAGAAAGGCCTAGGATAAAGTCCTGGGCTTCAAAGGAGCC
TGCCTCTGAGACACCTAGTCCCTATGCCAAGCAATTGTGCCTGTTCTTCC
CCTAGGTGGACTGAGCCTGGCTCCCAAGTTCCCCTCCTGCTAGAGGACTT
GCCTCTCAAGTCCTTCCGACCATGTCTCCTTAGTTTCCTCTTGTCCCCGT
CATCTCTTGTGGGCCAGCCATTAGGATCCTAGTGATACCGATGACCCTTC
CAGATCCCTGTTGGCCGCTCTCCATAGGCTGCCTGATAGGTTTTCTGGGA
AAAGGGGGCATTGAAAACTCCCCCTTTTTACTCGCATAGGGGCTGTCCCC
TCCCCTGCCTTTTTTTTTTCCGTCCCCCACCCCCTTCGTTCGTTAATAAT
CCGAACGATTAGACCTGAATTCCCTATGAACCCAATTAACTCCCCTTTCC
AACTTAATCGCCATCATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_o10.g1 MSMg01no430_o10.g1 CHROMAT_FILE:
MSMg01no430_o10.g1 PHD_FILE: MSMg01no430_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:59 2005
         (446 letters)



>mm_chr14_31377884_31378729
          Length = 846

 Score =  832 bits (430), Expect = 0.0
 Identities = 442/446 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctcaagaaggtcactgagttcagggccctgcaccagctatggcgctgctacctcacct 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctcaagaatgtcactgagttcagggccctgcaccagctatggcgctgctacctcacct 260

                                                                       
Query: 61  ccagaccctcacctcttctgggactctcagaaccagtcccctggctctagccccaccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagaccctcacctcttctgggactctcagaaccagtcccctggctctagccccaccctt 320

                                                                       
Query: 121 ccatgacaaaacttgtgttctctgagtgccgtgtcctgatttcatgctcgtacctcgccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatgacaaaacttgtgttctctgagtgccgtgtcctgatttcatgctcgtacctcgccg 380

                                                                       
Query: 181 ctatgctttgagaagaccacacttgcctgtattgagaggaagccccatgggagaaaggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ctatgctttgagaagaccacacttgcctgtattgagaggaagccccacgggagaaaggcc 440

                                                                       
Query: 241 taggataaagtcctgggcttcaaaggagcctgcctctgagacacctagtccctatgccaa 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 taggacaaagtcctgggcttcaaaggagcctgcctctgagacacctagttcctatgccaa 500

                                                                       
Query: 301 gcaattgtgcctgttcttcccctaggtggactgagcctggctcccaagttcccctcctgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaattgtgcctgttcttcccctaggtggactgagcctggctcccaagttcccctcctgc 560

                                                                       
Query: 361 tagaggacttgcctctcaagtccttccgaccatgtctccttagtttcctcttgtccccgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagaggacttgcctctcaagtccttccgaccatgtctccttagtttcctcttgtccccgt 620

                                     
Query: 421 catctcttgtgggccagccattagga 446
           ||||||||||||||||||||||||||
Sbjct: 621 catctcttgtgggccagccattagga 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)