BAC Information

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BAC

Clone NameMSMg01-431B18
Chromosome14 (Build37)
Map Location 80,121,365 - 80,302,025
singlet/doubletdoublet
Overlap genePcdh8, EG629734
Upstream geneDgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1
Downstream geneOlfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431B18.T7 (MSMg01no431_b18.b1)MSMg01-431B18.TJ (MSMg01no431_b18.g1)
ACCAG523444AG523445
length739853
length of high quality
(start - end)		481 (45 - 525)199 (73 - 271)
definitionCHROMAT_FILE: MSMg01no431_b18.b1 PHD_FILE: MSMg01no431_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:16 2005CHROMAT_FILE: MSMg01no431_b18.g1 PHD_FILE: MSMg01no431_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,301,549 - 80,302,025)(80,121,365 - 80,121,563)
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAGCAGCCAAGTGACATATTTATGCCATGCACTTAGTTACGCTTT
CGCTAACTCTGTGATTCTAATTTATTTGCTGGTAAAACACCATCCCTGCT
GATGTGCTCCACTGAGTATACTTCTGTCAAATACCATTCAATAAATAAAC
AGCGTGGCATACGAATAACAGTGCCCATTGCAGAAAATTGCTATAGCTTT
TACCTTGCTGGTGATAAACCCTGAGCTTCTGGTACTGTCCCGACCTGCTC
TATGGGAACATCCACCCAACCTCTTCCCAAGCAACCTCACCCAAACTTGG
TGTCTCCTTTAAGGACTGGAAGCTCAAAACCCCAGTTTACTAATATCACT
ACTGAGCTTATCTTCCTACCATGCAAGATGTCCTCCCTCCTCTGACCTCA
GGTACTCTTGAAAGACTGAAAATGCTTGCCAGGAGAGCTAGCAGCCACAG
CTATCATTGACAAAGCTTCTATCTTGGAATAAGAGCTTAAGACAGCACCA
TTTTATTTACTTAAGAAGAGTTTGACAAATATCAGTTGGCTGGGCTTTCA
AGGTGAGAAATTTTGGCACTGAAAATCCAGCACCTTGTTTGAAATTGGGC
CCCCCCGAAAAAAAAAAAAATATGGTTTGGAACCAAAAAATACCCTTCTC
CAAAGCCCAAGCTCTTTTAAAAAAAAAAAAAAATGCCCT

ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCAGGGTTTCCCACATTACCCTCATAG
TTTATGATCTTTCTCTGAGAACAAACTCATCCCTCTACCTCCAGGATGGA
TGTAGGGGAGCAGTGACCCTCAGAGATAGACTGGGATAAGGAGAGGTTTT
GAGATGAAAATAGATATTGGTTGGCAAAGGAACAAGATATAGAGGATGAA
AAAGGAGCTTGCTTTTTGGGGTGGGGTTCCTTGTTATTTTGAGGTACTTT
TCTCTTTTTCGCCTTATCTGTTCTCTTTCGCGGCTTTCGTATTTCTCTCC
TTCTGTGTTTATTCCTCGTTGTTTCCGTCGTTTTCTTCTTTGCACTCCCC
TTCTCTGTTCTCTTTCTCGCGCTCGCCCCCTTGTCCCTTTCTTTCTTTTC
TTTTTCCTTTGTCTTCTTTTTTTTGTTTCTCTGCTTCTCTCCGCTTCTCC
GTCTTCCTCTTCTCTTTCTTTTTCCCCTACTTTCTTTTTGTCGGCTCTCA
TTATTTTGCTTCTACTTTATGTCCCTTTCTCTCCTTCCCCCTTCTGTGTT
CTCCCCCCTCCTCTCTTTTTTCTTCTCCCCATTTTATATCCCTCATCCCT
CGTTTTACTCTTGCTCGTTTTTCTGCCATTTTCCCTATCCTTTCTTTTCT
CTCTGCCCTTCTTTATCTCCCTCTTTTTCCTCTCCCTTCTTCTTTCTTTA
TTTCTCCGTCCCCCACCCTCTTTTTTTCGTTTCCTCATTCATCGTCCTGT
CTCTGTCTGCACTTTATCTCCTCCTTTTCTTCTCGTTTCTTTTCTCCCTC
TAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_b18.b1 MSMg01no431_b18.b1 CHROMAT_FILE:
MSMg01no431_b18.b1 PHD_FILE: MSMg01no431_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:16 2005
         (481 letters)



>mm_chr14_80301345_80302225
          Length = 881

 Score =  907 bits (469), Expect = 0.0
 Identities = 475/477 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatagcagccaagtgacatatttatgccatgcacttagttacgctttcgctaact 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 gaattcatagcagccaagtgacatatttatgccatgcacttagttacgcttttgctaact 622

                                                                       
Query: 65  ctgtgattctaatttatttgctggtaaaacaccatccctgctgatgtgctccactgagta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtgattctaatttatttgctggtaaaacaccatccctgctgatgtgctccactgagta 562

                                                                       
Query: 125 tacttctgtcaaataccattcaataaataaacagcgtggcatacgaataacagtgcccat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacttctgtcaaataccattcaataaataaacagcgtggcatacgaataacagtgcccat 502

                                                                       
Query: 185 tgcagaaaattgctatagcttttaccttgctggtgataaaccctgagcttctggtactgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 501 tgcagaaaattgctatagcttttaccttgctggtgataaaccctgagcttctggtactgc 442

                                                                       
Query: 245 cccgacctgctctatgggaacatccacccaacctcttcccaagcaacctcacccaaactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccgacctgctctatgggaacatccacccaacctcttcccaagcaacctcacccaaactt 382

                                                                       
Query: 305 ggtgtctcctttaaggactggaagctcaaaaccccagtttactaatatcactactgagct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgtctcctttaaggactggaagctcaaaaccccagtttactaatatcactactgagct 322

                                                                       
Query: 365 tatcttcctaccatgcaagatgtcctccctcctctgacctcaggtactcttgaaagactg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcttcctaccatgcaagatgtcctccctcctctgacctcaggtactcttgaaagactg 262

                                                                    
Query: 425 aaaatgcttgccaggagagctagcagccacagctatcattgacaaagcttctatctt 481
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatgcttgccaggagagctagcagccacagctatcattgacaaagcttctatctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no431_b18.g1 MSMg01no431_b18.g1 CHROMAT_FILE:
MSMg01no431_b18.g1 PHD_FILE: MSMg01no431_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:16 2005
         (199 letters)



>mm_chr14_80121165_80121763
          Length = 599

 Score =  377 bits (195), Expect = e-109
 Identities = 198/199 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagggtttcccacattaccctcatagtttatgatctttctctgagaacaaactcatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagggtttcccacattaccctcatagtttatgatctttctctgagaacaaactcatcc 260

                                                                       
Query: 61  ctctacctccaggatggatgtaggggagcagtgaccctcagagatagactgggataagga 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ctctacctccaggatggatgtaggggggcagtgaccctcagagatagactgggataagga 320

                                                                       
Query: 121 gaggttttgagatgaaaatagatattggttggcaaaggaacaagatatagaggatgaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggttttgagatgaaaatagatattggttggcaaaggaacaagatatagaggatgaaaa 380

                              
Query: 181 aggagcttgctttttgggg 199
           |||||||||||||||||||
Sbjct: 381 aggagcttgctttttgggg 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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