BAC Information

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BAC

Clone NameMSMg01-432P22
Chromosome14 (Build37)
Map Location 17,922,275 - 17,922,662
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb, Tpi-rs9
Downstream geneThrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432P22.T7 (MSMg01no432_p22.b1)MSMg01-432P22.TJ (MSMg01no432_p22.g1)
ACCAG524881AG524882
length813780
length of high quality
(start - end)		392 (45 - 436)418 (75 - 492)
definitionCHROMAT_FILE: MSMg01no432_p22.b1 PHD_FILE: MSMg01no432_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:57 2005CHROMAT_FILE: MSMg01no432_p22.g1 PHD_FILE: MSMg01no432_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTAGCATGCCTAATGTTATTATGCCAAATCCCAAATTAATTCAC
AATGAGTATCTTGAAGTCTCAGCAATGCTTTAAAAGGGAGGGGAAGAAGA
GATGAGAAATTAAACTGAGCCATTATAGTGAAATACAGAGAGGTTTGCTA
TCTAAGCAGTTCAGATAGATTGCTGGAATTAACCTATATATTTATGAAGC
ACCCTTCTGATCTCAGTTCAGTTTTGCAGTAATTTTCCCAGCTGGGAAAA
TAATGTGCTAAATGAATAGCTCCCGTACTCAGTCTCTTGACCTTTTACCC
TTGTCTGCACATCTTCATTGTTTGTGTGGCTTTTGTTATCCCGGCAGCAA
GTCATCCTGGAAACAAAGTGGGATGTAAATAAGGAATCCAAGAACAAAGG
AAAAATGCTATTTCTTTGTCAGTTCATATTTTAGCTGGATAATTACCGAA
ATAGTTTCCTGGAAGGTTTAATCCTTCCCCCCATTAGCCAGGGTTTGAAC
ATCCCTTGGCCAGGTTTAACAGGAACATCTTTGAGCCCGGGTTCCCTGGC
CCCCCAAAGGAAAAACTTGTCTAATAAAAACCCTTTATCCCCTCATCTTG
ACCGAAAATCCCTCTGTATAACCATTATTTTTTTATTTCTACAAACTCTT
TGTCCTTAACCCTCTTATACCCAAAAGTGTGTTTATTCAAAGATTTTTTT
CACCTTATTATGGCGCTTGATTTTTCTCTCCCCTCTCTTCTTTTTATTTT
TCTCTTCAAAACT

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGCAGTTGAATCCTTCTCAACAGTC
TGTTTTACGGGAACCTTTATTACCGTGACCCGCAGTTCTGGTTCTGGAAT
GAGGGATCTTCCTTGCGCTGGTCCCGAGTTTTCTTGTATTTTTTCGTCCC
GGATTTTTTCTCGTCCCGGGTTTCAGCACCAATTCTTAATAGCGTTCGCG
CGCCCGGCCAGGAAGAACACAACAAACCAAAATCTTCTGCGGCAAAACTT
TATTGCTTACATCTTCAGGAGCCAGGAGCGCAAACCCCCAGCCCCAAAAG
CGAAAGCCACCCCAATAACGAAACCGAAACCCCTTCCCTATTTAGGAGAG
TTATATTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCAGCCCATGGC
CGAGCTGACGTTCACGGGAAAGGCAGAGTACAAGTAGTCGTAAAATACCC
TTGGCACATGTGCAGATTATTTGTTTACCACTTAGAACCAGGATGTCAGC
GCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCCACATGTTTTTCCTA
TAATTCCTCTTTAAGCCCCCCTTATCTTCTGGAGAAGGGGTTTTAAACCA
GGCCTGGTTTTTTCTGGGGCAGGGGAAACCTGGGATTTCCCCGGAAAAAA
AGGGGGGTCTTTTTGAGACCAAACACCCCTGGTCTCGTTGGTTCTTTTCC
CTCCTTGTTCCCTCTCACTAGATATCCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_p22.b1 MSMg01no432_p22.b1 CHROMAT_FILE:
MSMg01no432_p22.b1 PHD_FILE: MSMg01no432_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:57 2005
         (392 letters)



>mm_chr14_17922071_17922862
          Length = 792

 Score =  727 bits (376), Expect = 0.0
 Identities = 385/388 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttagcatgcctaatgttattatgccaaatcccaaattaattcacaatgagta 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttagcatgattaatgttattatgccaaatcccaaattaattcacaatgagta 264

                                                                       
Query: 65  tcttgaagtctcagcaatgctttaaaagggaggggaagaagagatgagaaattaaactga 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttaaagtctcagcaatgctttaaaagggaggggaagaagagatgagaaattaaactga 324

                                                                       
Query: 125 gccattatagtgaaatacagagaggtttgctatctaagcagttcagatagattgctggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccattatagtgaaatacagagaggtttgctatctaagcagttcagatagattgctggaa 384

                                                                       
Query: 185 ttaacctatatatttatgaagcacccttctgatctcagttcagttttgcagtaattttcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaacctatatatttatgaagcacccttctgatctcagttcagttttgcagtaattttcc 444

                                                                       
Query: 245 cagctgggaaaataatgtgctaaatgaatagctcccgtactcagtctcttgaccttttac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagctgggaaaataatgtgctaaatgaatagctcccgtactcagtctcttgaccttttac 504

                                                                       
Query: 305 ccttgtctgcacatcttcattgtttgtgtggcttttgttatcccggcagcaagtcatcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccttgtctgcacatcttcattgtttgtgtggcttttgttatcccggcagcaagtcatcct 564

                                       
Query: 365 ggaaacaaagtgggatgtaaataaggaa 392
           ||||||||||||||||||||||||||||
Sbjct: 565 ggaaacaaagtgggatgtaaataaggaa 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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