BAC Information

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BAC

Clone NameMSMg01-433G22
Chromosome14 (Build37)
Map Location 17,102,889 - 17,103,256
singlet/doubletsinglet
Overlap geneNgly1
Upstream geneLrrc3b, LOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm
Downstream geneTop2b, Rarb, Tpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433G22.T7 (MSMg01no433_g22.b1)MSMg01-433G22.TJ (MSMg01no433_g22.g1)
ACCAG525216AG525217
length777752
length of high quality
(start - end)		372 (43 - 414)356 (68 - 423)
definitionCHROMAT_FILE: MSMg01no433_g22.b1 PHD_FILE: MSMg01no433_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:31 2005CHROMAT_FILE: MSMg01no433_g22.g1 PHD_FILE: MSMg01no433_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:31 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAA
TTCACATCATCTTACTGAAATCTGAGAACCACAGCATTATTATATCATTT
CCGTAGTATTGCAAAAGGCTAACTGTAGTTTTTTTTTTCTTCTTAGGTTG
TTGGTGATTCAACCATCTTAAAAGTTCTTCAGTCCAACATTCAGCATGTG
CAGCTCTATGAAAACCCTGTCCTCCAGGAGAAAGCATTGACTTGTATCCC
AGTCAGTGAACTAAAAAGAAAAGCTCAAGAAAAGTTATTCAGAGCTAGAA
AGTTAGATAAAGGTAGTGGCTTCCATAATGATTTATTGCTAAGTATGCAT
CATTGCTAGATAGTAGTGCCTTTGGCTATATGTGCACACTATAAATACAT
TACCTACACCTATGTGGATTTTTAAGAAGCATATCAACAATGGACTTATA
TTTGCTTTTCTAACAAAGTATTTTTGTGCGAACAGCACCGTATTTAACCC
CCCACCCTATTCCCCCCTACGTAAACCGTTCTTTCTATTGGATATCTTTT
TTGTTGCCTCCCGAACCCTATTTCTACCTCCCCCCCTTTTTTTCCTCACA
ACATTATCTTCCCCCAATTACGTGTTAGTTCCCCTCTTTTTTTTTTTTTC
CCCCTTAGTTTTATCTTTTGCCAACTTTTTTTCCCCCCCTTTCTAATCCC
TTACTTCCCTTGCCATATCACACCCTACTTTTCCTTCCCCCCCTTTCCAT
TCCCTTTTTTTTCCCCTTTTTTTCTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGCCAGCCTGGGACAGAGCATATTCCAAAAA
AGAACAGTTTAGGTCCATGCGTGGTGGCACACACCTTTAATCTGGGCTGC
TGGAGGCCTACACAAGGACAGTAGAAGAAGGAAGGTTCATTCTTCCCGCC
TGCTTGCGCTTACTTACCAGCACATCTGTTTCAGGATTCCAGCTTATGCA
GCTGAAACAACTAGCCTTGTGGGACTGAGCAACTACTAGATTCTTGAACT
TCCCATTCGCAGCTGTCCATGGTTGGGTTAGTTGAACTATAGACTCTAAG
TCATTATAATAATTTCCCTTAATATATAGAGAATAAGTTCCATAGATGTA
GAGAAACCTGACTAATACAGGAGTCAAATGCCTCCTCCCATCATATGGAG
TCGCTGGACAATAAATGAACATGTACGTGTGGGAAACACCTATGAGGGAG
TGGACCCTTCCTCCCCCTCGAAAGCATGGAAGTACCTCGTCTCTTGTTCT
TCTCCCCTCTCCCCTATCTTTCTCTCCTTACCTCTTTTCCTTTTTCCCCT
CCTCTTCCTTTCTTACTCTTCCATTCCTTCTTTCCATTTTCCTTTTCTCG
CCCCGCGATTCCTTCCCTTCTCTCCCTCCTTTTCCCTTTCCTTTTCCATC
TTACCTCCTTTTCCTTTCTTTCCCTTTCCCCCTTTTCCCTTTTCCTTTCC
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_g22.b1 MSMg01no433_g22.b1 CHROMAT_FILE:
MSMg01no433_g22.b1 PHD_FILE: MSMg01no433_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:31 2005
         (372 letters)



>mm_chr14_17102684_17103456
          Length = 773

 Score =  696 bits (360), Expect = 0.0
 Identities = 366/368 (99%), Gaps = 1/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcacatcatcttactgaaatctgagaaccacagcattattatatcatttccgtagt 65
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcacatcatcttaatgaaatctgagaaccacagcattattatatcatttccgtagt 265

                                                                       
Query: 66  attgcaaaaggctaactgtagtttttttttt-cttcttaggttgttggtgattcaaccat 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 266 attgcaaaaggctaactgtagtttttttttttcttcttaggttgttggtgattcaaccat 325

                                                                       
Query: 125 cttaaaagttcttcagtccaacattcagcatgtgcagctctatgaaaaccctgtcctcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cttaaaagttcttcagtccaacattcagcatgtgcagctctatgaaaaccctgtcctcca 385

                                                                       
Query: 185 ggagaaagcattgacttgtatcccagtcagtgaactaaaaagaaaagctcaagaaaagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggagaaagcattgacttgtatcccagtcagtgaactaaaaagaaaagctcaagaaaagtt 445

                                                                       
Query: 245 attcagagctagaaagttagataaaggtagtggcttccataatgatttattgctaagtat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 attcagagctagaaagttagataaaggtagtggcttccataatgatttattgctaagtat 505

                                                                       
Query: 305 gcatcattgctagatagtagtgcctttggctatatgtgcacactataaatacattaccta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gcatcattgctagatagtagtgcctttggctatatgtgcacactataaatacattaccta 565

                   
Query: 365 cacctatg 372
           ||||||||
Sbjct: 566 cacctatg 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 773
Length adjustment: 9
Effective length of query: 363
Effective length of database: 764
Effective search space:   277332
Effective search space used:   277332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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