BAC Information

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BAC

Clone NameMSMg01-433K06
Chromosome14 (Build37)
Map Location 20,549,068 - 20,549,314
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855
Downstream geneNid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433K06.T7 (MSMg01no433_k06.b1)MSMg01-433K06.TJ (MSMg01no433_k06.g1)
ACCAG525376AG525377
length776766
length of high quality
(start - end)
249 (73 - 321)243 (70 - 312)
definitionCHROMAT_FILE: MSMg01no433_k06.b1 PHD_FILE: MSMg01no433_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:47 2005CHROMAT_FILE: MSMg01no433_k06.g1 PHD_FILE: MSMg01no433_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGG
AATTCTTGTTGATGTCCCGTAGATACTAGAAAACCTTACAGATGCACTGG
TAATTCAGATAGCCATCCCCTATTGCTTGGGTCAGTTGAATCAGGATCTT
GGTTACTCACAGTTGAAGTCTTGCATAGCAGGTGCAATGAATGGTTCACT
TTAGGATATACTTTCTGACGAATTTATCAACTGAAATCACCAAAAAGATA
CATTTCTTAAAGTTAGAAATCCCTCAGGAATTTTATTTCTATTTTTTTTT
TATGCCTTTAAAAGTTTCAGTCTTTATGATCTTTTCTCACCAGGCATGTT
GGGGGACACGCCTCTAATCCCAGCAGTCTGGAGGCAGTCAGGTGAATCTC
TGTGAGTTCGAAGCCAGCCTTGTTTATGTATTTTGTTACGCCACGGACCG
GCCCATTTATTGACCCCCCCGCTCCACTTTTCCCTTTTCCCCTTTTTTTA
CCCACCAATCACCTTTATTAACTATTAGCTATCTATTATATTTTCACCCC
CTCTGCTTTTTCACCCTTCCACACCTTTTTTTCCTCGCCCTCTTTGTCTT
GCCCCCTTTGCTCTGCCTTTCCCTTTTTTTCTTTTTTTCCCCCTTTTGTT
TTTTTTTTCACCACCTTTTTTTACCCCGCCCCTTTTTTCCTCTATCTTTC
CTTTTTTTTTCCTCTCTCCTTCTTTTTTTCTCTCCCCCCTTTTCACCTTC
TTTTTTTTTCCCCACCTTTTTTCTTC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACCACAGAACTCAAATATTTCATCAAGTTGA
ACACATAATGCAAGTGCATTGTTGCTTGAAGTATGGTTTCCAGTCCTAAG
CATTGGCATTGTCAGCAGACTGTAAGGCAGGCAATTCCTCAGGTCCTACC
ACATACCCTTATGACCAGAATATAGAGAGAGTCACACACACACACACATG
CATGCACACAGAATCAGGGTGTGTTTGCAGGGAGAATGAGAAAGTACAAT
TGAAATAGAATCCTTAGGAAATGCAGAGGACATTCTGTTTATAAGACCCA
AAATCTGAGAAGAGTATTAATGAGCCCAAGACCTTCCATCATGTATCAGG
ATGGACCAAATGGGACCAAGCTTTCCTGGTGATATAGCAAGCTTCAGCAA
GTAACACCTGCCAGACAATTACAAAGCTTTGCAAACAACCAAATCAAGAA
CCTCCTGCTAGCGCACTATCAATCACAACCTCTCTGCTACTAATATCCTC
CTCCTAACGGCCACATGTCTAGCGCCTCAACCATATCTGGCTTGAGGATC
CCATTTCTCCTTTTCATCCCCCCCTGTCTAGCGTTTTTTTTTTCCCCCCT
CCCTTTTCCCTTCCCTACCCCCTCCCGCCGCTTTTCCCTTTCCCGTTTCC
CTTCCTTTCCGCTTTTTCCCTTTGCCTCTTCCCTTTCTCCCCCTTTTCCC
TTTTTCTTTTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_k06.b1 MSMg01no433_k06.b1 CHROMAT_FILE:
MSMg01no433_k06.b1 PHD_FILE: MSMg01no433_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:47 2005
         (249 letters)



>mm_chr14_20548868_20549514
          Length = 647

 Score =  418 bits (216), Expect = e-121
 Identities = 241/250 (96%), Gaps = 4/250 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactagaaaaccttacagatgcactggtaattcagatagccatcccctattgcttgggt 60
           ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 447 atactagaaaaccttacagatacactggtaattcagatagtcatcccctattgcttgggt 388

                                                                       
Query: 61  cagttgaatcaggatcttggttactcacagttgaagtcttgcatagcaggtgca-atgaa 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 387 cagttgaatcaggatcttggttactcacagttgaagtcttgcatagcaggtg-agatgaa 329

                                                                       
Query: 120 tggttcactttaggatatactttctgacgaatttatcaactgaaatcaccaaaaagatac 179
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 328 tggttcactttaggatatactttctgacgaatttatcagctgaaatcaccaaaaagatac 269

                                                                       
Query: 180 atttcttaaagttagaaatccctcaggaattttatttctattttttttttatgcctttaa 239
           ||||||||||||||||||||  ||||||||||||||||||||||||||  ||||||||||
Sbjct: 268 atttcttaaagttagaaatctttcaggaattttatttctatttttttt--atgcctttaa 211

                     
Query: 240 aagtttcagt 249
           ||||||||||
Sbjct: 210 aagtttcagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 647
Length adjustment: 9
Effective length of query: 240
Effective length of database: 638
Effective search space:   153120
Effective search space used:   153120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)