BAC Information

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BAC

Clone NameMSMg01-433M18
Chromosome14 (Build37)
Map Location 15,817,455 - 15,817,737
singlet/doubletsinglet
Overlap genenone
Upstream geneAtxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7, Nek10
Downstream geneLrrc3b, LOC667205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433M18.T7 (MSMg01no433_m18.b1)MSMg01-433M18.TJ (MSMg01no433_m18.g1)
ACCAG525496AG525497
length769799
length of high quality
(start - end)
283 (73 - 355)322 (67 - 388)
definitionCHROMAT_FILE: MSMg01no433_m18.b1 PHD_FILE: MSMg01no433_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:59 2005CHROMAT_FILE: MSMg01no433_m18.g1 PHD_FILE: MSMg01no433_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCTTATAATTTGCGGGCGCTAATAGAATCACTATATCTAGAGGATC
CGCGGAATTCAATGGTTTTCCCACTTGAGCTCACTCCAGTAAGCTCACAT
CCCTAAGATAGGCAGTACAAGCAAGCTACCGTGTCCTAGTGAGATAAATA
CAGTTAGCACAGTGTCCCATCCATCAATCTTTCAGTAAGAATTGAAAACT
ACGTAAAATGGTAATGGCTCATTTATATATGAAGTACGTATAACAACATA
GTCAGTATAAAATCAGAACCAAAACGCACGGCTCATGCTTGCCAGATACT
GTGAGCACTCCTTTGTGCTTGTTTTCTTGCAACTCTTCCACAGCAAACTT
GCAAAGCAGGTTCTGTTCCTAGGTAAGTAAAGGATGGTTCACACCCCTTT
TCTTTTGAGGTGTGTTTGTATCCCCCCTTTTTTTATTCCTCCCCCCCCTC
TCCTCCTTTTTTGTTCCCCCTGCTCCCCTTTTTTTTCTTTTTCCCTCTTT
TTTCCCCCCCTTTACTCCTTTTTTATTTTCCGGTTTTTTCTTTAATTTTT
CCACCCCCTTCTTTTTTCCCCCTTCCTCCTCCCTTTTTCCTCCACCCTCT
TTTTCTTCCCCTTTTACTTTTAATTCCCCTCATTTTTTTTTCTTCCTCCT
TTTTTTTTTTTTTCCCACCTTTCTTTCCCCCCCCTCTTTTTCTTTTCTTA
CTTTCTTTCTCCCTCCCTTTCGTTGTTCTCTCCCCCTTCCCCTTCCTTTT
TTTTTCCCCTTTGTTCCTG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTAGAAGGGAGCTGGAAATATGGCTTGGCACTTCA
GAGCACTTGCTGATCTTTCAAAGGACCCTGGTCCAATTCTTAACACCCAT
ATCAGTGGACTCATATTGCTTGTAACTTCAGTTTGGGGATAAATTGAAGC
CTTCTAGCTTCTACCTCCCCAGGGATTTGAATGCATGTAGTACATACAAA
CTAAGAAAGGTACAGAAATATACACAAGTAAAATAAATCCACTAAAGAAA
AAAAAAAGGTATCTTTAAAAAGAGAAAAAGTAATTCTGGGAGCTGAACAT
GGTCACATACACCTGTAATCCCAGTGCTGGAAAGGGGGAGGCAGCATAAT
CACTGTGCACAAGCCAGCTTGGTGTACCTGATCTTCCGTATGGTCCGGTA
TGCCCAGCGAGATTCTATCCCTTCATCTAACCGCACCGTTCATCCCCTTT
CCTCCTGTCTGCCCCCTTCATCTCCTCCCACCCCCTTTTTCCCCTCGTCT
TCTGTTCCTTCTCCCCTCCTCCCTTTCCTACCCTTACCCTTCCCTCTTTC
TCCCCTTTTCTCCCTCTTTCTTCTCCCTTCTTCCTGTTTCCATTTCCCTC
TTTGCTTTCTTTTCCTTTTCCCCCCCCCCCTTTTCCCTTCCCTCTTCCCC
TCCGCTCTTTTTCTCCCTTTCCCTCTTTCCCATTCTTCTCCTCCTTTTTC
CCCTTACCCTTCCCCCTCCCCCCCTTTTTCCCTTTTTCTCTTTCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_m18.b1 MSMg01no433_m18.b1 CHROMAT_FILE:
MSMg01no433_m18.b1 PHD_FILE: MSMg01no433_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:59 2005
         (283 letters)



>mm_chr14_15817255_15817937
          Length = 683

 Score =  480 bits (248), Expect = e-140
 Identities = 275/284 (96%), Gaps = 2/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgagctcactccagtaagctcacatccctaagataggcagtacaagcaagctaccgt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 483 acttgagctcactccagtaagctcacatccctaagataggcagtgcaagcaagctaccgt 424

                                                                       
Query: 61  gtcct-agtgagataaatacagttagcacagtgtcccatccatcaatctttcagtaagaa 119
           || || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gt-ctcagtgagataaatactgttagcacagtgtcccatccatcaatctttcagtaagaa 365

                                                                       
Query: 120 ttgaaaactacgtaaaatggtaatggctcatttatatatgaagtacgtataacaacatag 179
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttgaaaactacgtaaaatggtgatggctcatttatatatgaagtacgtataacaacatag 305

                                                                       
Query: 180 tcagtataaaatcagaaccaaaacgcacggctcatgcttgccagatactgtgagcactcc 239
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 304 tcagtataaaatcagaaccaaaacgcacagctcatgcttgccagatactgtgagcactcc 245

                                                       
Query: 240 tttgtgcttgttttcttgcaactcttccacagcaaacttgcaaa 283
           ||||||||||  ||||||||||||| ||||||||||||||||||
Sbjct: 244 tttgtgcttgcattcttgcaactctcccacagcaaacttgcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)