BAC Information

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BAC

Clone NameMSMg01-434H21
Chromosome14 (Build37)
Map Location 18,709,193 - 18,709,716
singlet/doubletsinglet
Overlap genenone
Upstream geneTpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434H21.T7 (MSMg01no434_h21.b1)MSMg01-434H21.TJ (MSMg01no434_h21.g1)
ACCAG526024AG526025
length739750
length of high quality
(start - end)		527 (37 - 563)472 (69 - 540)
definitionCHROMAT_FILE: MSMg01no434_h21.b1 PHD_FILE: MSMg01no434_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:55 2005CHROMAT_FILE: MSMg01no434_h21.g1 PHD_FILE: MSMg01no434_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATA
GTGCCTCCTTTTAATCTTTTACTCCTACAGTATTGTGGATACCTTTAACT
CAATTAAATTCCCAAACATTTGTAAAATAAGAATCAAACTAGAGAAGTGT
ATTTGGAAAGAAACAAGCTTGATGAAAAACATCTCTGTGGAGCAATTCTT
ATAGCAAATTCTTACTGGCATATGGATGTATTATTAATGATGCCACCCTT
AATCCAAAATTCTGATTACTTAAGTGCTGATTTCTTAACATAACTTTTTA
GAGACAGTGTTATTCATTCTTTATAGCTTCAACTTAACTTCAACATTGCT
TTTCCCCATGGAAACCCTGAGGAACACAGGCAGAAGGCAACAACTGAAGA
CTTACAGCTTTCTAGTCTCATTCCATGCATTCCCACAACTAACTAAATGC
CATAACTGTAATGTGGAGACCTTCCAGCCAGAACTTCTCTAAGTGACAAA
ATATACAGAGGTCTTGGGTTTCAGATCTGACAGGGAAGAGCACAGTAGCC
CAGCCCTGCTGGGCTGAGACCCCTGACCCTTTCACAACCCAGACCTGCAN
GAATTCTAGGGTGGAAGGTTAGAAGATCCAGTGACTTCCCACCATAAAGT
GGTAAAGACTGCTAAAGTACCTCAATGCTATTGGGCTGAAGATTGGAACA
ACCCACTTGGTCCCCTCCAAAAAAACGTGGAGGTTAAAA

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTATAGTGACAGACAAGTAGACCAATGGA
ACAGAATTGAAGACCCAGAGATGAACCCACACACCTATGGCCACTTGATC
TTTGACAATGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAA
CAAATGGTGCTGGCACAACTGGTGGTCATCATGTAGAAGATTGCGAATTG
ATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAATAGGATTAAGGAA
ATACACATAAAATCAGAGACTCTGAAACTTATAGAGGAGAAAGTAGGGAA
AAGCCTCGAAGATATGGGTACAGGGGAAAAATTCCTGAATAGAACAGCAA
TGGCTTGTGCTGTAAGATCAAGAATCGATAAATGGGACCTCATAAAATTG
CAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAAC
AAGAGATTGGGAAAGGATCTTTACCTATCCCAAATCGGATAGGGGACTAA
TATCCAATATGTATAAAGAACTCAAGAAGGTGGACTCCATAAAAATCAAT
AACCCCATTTAAAAATGGGGCTCAGAACTGAACAAAGAATTCTCCCCCGA
GGAAAAAACGAAAGGGCGAAAAACCACCCGAAAAAATGGTTCAATATCCT
TTATCCTCTGGGAAAAAGCGAATCAAAAACACCCCTGAAAAATCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_h21.b1 MSMg01no434_h21.b1 CHROMAT_FILE:
MSMg01no434_h21.b1 PHD_FILE: MSMg01no434_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:55 2005
         (527 letters)



>mm_chr14_18708990_18709916
          Length = 927

 Score =  990 bits (512), Expect = 0.0
 Identities = 521/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctatagtgcctccttttaatcttttactcctacagtattgtggatacctttaac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 204 ggaattctatagtgcctccttttaatcttttactcctacagtattgtggattcctttaac 263

                                                                       
Query: 64  tcaattaaattcccaaacatttgtaaaataagaatcaaactagagaagtgtatttggaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaattaaattcccaaacatttgtaaaataagaatcaaactagagaagtgtatttggaaa 323

                                                                       
Query: 124 gaaacaagcttgatgaaaaacatctctgtggagcaattcttatagcaaattcttactggc 183
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 gaaacaagcttgatgaaaaacatctctgtggagcaattcttagagcaaattcttactggc 383

                                                                       
Query: 184 atatggatgtattattaatgatgccacccttaatccaaaattctgattacttaagtgctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atatggatgtattattaatgatgccacccttaatccaaaattctgattacttaagtgctg 443

                                                                       
Query: 244 atttcttaacataactttttagagacagtgttattcattctttatagcttcaacttaact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atttcttaacataactttttagagacagtgttattcattctttatagcttcaacttaact 503

                                                                       
Query: 304 tcaacattgcttttccccatggaaaccctgaggaacacaggcagaaggcaacaactgaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcaacattgcttttccccatggaaaccctgaggaacacaggcagaaggcaacaactgaag 563

                                                                       
Query: 364 acttacagctttctagtctcattccatgcattcccacaactaactaaatgccataactgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acttacagctttctagtctcattccatgcattcccacaactaactaaatgccataactgt 623

                                                                       
Query: 424 aatgtggagaccttccagccagaacttctctaagtgacaaaatatacagaggtcttgggt 483
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 624 aatgtggagaccttccagccagaacttctctaagtgacaaaatgtacagaggtcttgggt 683

                                                       
Query: 484 ttcagatctgacagggaagagcacagtagcccagccctgctggg 527
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttcagatctgacagggaagagcacagtagcccagccctgctggg 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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