BAC Information

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BAC

Clone NameMSMg01-434K16
Chromosome14 (Build37)
Map Location 66,608,305 - 66,783,763
singlet/doubletdoublet
Overlap geneGulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b
Upstream geneD14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu
Downstream geneLOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434K16.T7 (MSMg01no434_k16.b1)MSMg01-434K16.TJ (MSMg01no434_k16.g1)
ACCAG526154AG526155
length730773
length of high quality
(start - end)
453 (67 - 519)173 (70 - 242)
definitionCHROMAT_FILE: MSMg01no434_k16.b1 PHD_FILE: MSMg01no434_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:09 2005CHROMAT_FILE: MSMg01no434_k16.g1 PHD_FILE: MSMg01no434_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,783,331 - 66,783,763)(66,608,305 - 66,608,474)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGAGCTCTAGCGATGGATGAGGGTCCTATGGACTTGAGCGCCACCCAAGG
CTCTGTGCAGAGGCTCTGGTTAGGACCTAGGTGGTCAGTGAAGAGGGAGC
AGGGGCCCATCTGAGCTGTCTGCATCCATCATTGCCAGCCTTGAACCTCT
CCAAGGCTGTAGCCTGTGACTCACAATTCCCTGTGCCACTCTCTTGCATC
TGAGTGGGAGCTAGCCCAGCCTCCTGCCTTTCCTTCCCCTCCATCCCCTT
GAACGGAGTTGTGGCTTGTTTATTTAATATTTCAAAAGACAAGAACCAAT
GTTAGCTTTGCTGGTCCTCCAGACAGGAAGAGAAAGCCTCCCAACCACAC
TTTCCTTGTCAGGGAGATGGCCCTGTGTCAAAAATCAAGCCCAGCCAAGA
ATGGACAACAAATTCTCTCCACATAAAGAAAATGTCCTGCAGGAGGTGAC
AATAATGCCTTTAAAAAGAGATATGTAGGCTGCCACAATAGTTTAGTGGG
TAAAGGCACTTATTGCCTGAGTTCGATCCCTGGACCCCACATGGTGTCAA
AGAGAAAACCCATGTCCAGAATTTGCTTCCTGACCTCCCCCTATACTTAT
ATGGAATGCATCTTTTTTCTCTCTCTCACTTCCTTCCTTAGATTATTTCA
TCATTGTTCACCCTGTTCTCCTCTTTCCTT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGCTGTCCCTGGCTTTGCAAGGATTTGGGGC
CTTACACATGGGGGAAGAACACCCTAGAAAGATCAAGGTGGCCACTATTT
TTTTTTCAAAGCCAGAGAAGGCCTGAGTCTCATGGCGGTGTGAAGCAAGA
CTGGAGGTGGTGTGGGTGGTAGATGAGGGATACATCTTANCNAGAAACCT
TTTTAGACTAATTCCCTCAGGCACCTCCTGCAGGCTAAAAAGAGAGAAAA
GAAGGCCAGCCACAGGTTTGTTCTTTGACCCAGGAACTGACAAGAACCTC
AATGCATTTTTTACCCCCACATCAGGCACCCGCCTCTCTTCTGTTGAACT
TAGACTAGCTCCCGCCATCCATCCCATTATATCCTGTCTTCCAGGCTCTG
CGTACATTTTACTTGTGCTGCAGCACTTGCATGTTGACTATTTTGTCTCA
TTCTTGTTATCCTTTCCCTCTTTTTTCCATATCTATCCCTTTATTGACTC
TACCTCTCCTTCTGTATCGCTCACATCATCTCACATCTCTCTCCTTCTCC
TTACTCGCTGATTCTTTCCTCTACCTCTCATTCGATCTCCCATCCGCCCC
TTACCCCCCCCTCGCTCATTTTTCTCCTATCTTTTTTTTTTTTTCACGTA
CATTCTATTTCCCTCCTTCCCGTCTTCTCCTCTTTTTCCAACATCCCCTT
TTTCCCTTTCTCTTCTTATACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_k16.b1 MSMg01no434_k16.b1 CHROMAT_FILE:
MSMg01no434_k16.b1 PHD_FILE: MSMg01no434_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:09 2005
         (453 letters)



>mm_chr14_66783131_66783983
          Length = 853

 Score =  768 bits (397), Expect = 0.0
 Identities = 424/433 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagggtcctatggacttgagcgccacccaaggctctgtgcagaggctctggttaggac 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 633 atgagggtcctatggacttgagcaccacccaaggctctgtgcagaggctctggttaggac 574

                                                                       
Query: 61  ctaggtggtcagtgaagagggagcaggggcccatctgagctgtctgcatccatcattgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ctaggtggtcagtgaagagggagcaggggcccatctgagctgtctgcatccatcattgcc 514

                                                                       
Query: 121 agccttgaacctctccaaggctgtagcctgtgactcacaattccctgtgccactctcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agccttgaacctctccaaggctgtagcctgtgactcacaattccctgtgccactctcttg 454

                                                                       
Query: 181 catctgagtgggagctagcccagcctcctgcctttccttcccctccatccccttgaacgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 catctgagtgggagctagcccagcctcctgcctttccttcccctccatccccttgaacgg 394

                                                                       
Query: 241 agttgtggcttgtttatttaatatttcaaaagacaagaaccaatgttagctttgctggtc 300
           ||||||||||||   ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agttgtggcttgaaaatagaatatttcaaaagacaagaaccaatgttagctttgctggtc 334

                                                                       
Query: 301 ctccagacaggaagagaaagcctcccaaccacactttccttgtcagggagatggccctgt 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctccagacaggaagagagagcctcccaaccacactttccttgtcagggagatggccctgt 274

                                                                       
Query: 361 gtcaaaaatcaagcccagccaagaatggacaacaaattctctccacataaagaaaatgtc 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 273 gtcaaaaatcaagcccagccaagaatggacgacaaattctctccacataaagaaaatgtc 214

                        
Query: 421 ctgcaggaggtga 433
            ||||||||||||
Sbjct: 213 atgcaggaggtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no434_k16.g1 MSMg01no434_k16.g1 CHROMAT_FILE:
MSMg01no434_k16.g1 PHD_FILE: MSMg01no434_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:09 2005
         (173 letters)



>mm_chr14_66608105_66608677
          Length = 573

 Score =  313 bits (162), Expect = 3e-90
 Identities = 168/170 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgtccctggctttgcaaggatttggggccttacacatgggggaagaacaccctagaa 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 agctgtccctggctttgcaaggatttgaggccttacacatgggggaagaacaccctagaa 260

                                                                       
Query: 61  agatcaaggtggccactatttttttttcaaagccagagaaggcctgagtctcatggcggt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 agatcaaggtggccactatttttttttcaaagccagagaaggcctgagtctcgtggcggt 320

                                                             
Query: 121 gtgaagcaagactggaggtggtgtgggtggtagatgagggatacatctta 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaagcaagactggaggtggtgtgggtggtagatgagggatacatctta 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)