BAC Information

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BAC

Clone NameMSMg01-435F08
Chromosome14 (Build37)
Map Location 52,727,709 - 52,728,139
singlet/doubletsinglet
Overlap genenone
Upstream geneGm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc
Downstream geneRpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435F08.T7 (MSMg01no435_f08.b1)MSMg01-435F08.TJ (MSMg01no435_f08.g1)
ACCAG526662AG526663
length778780
length of high quality
(start - end)		433 (47 - 479)312 (77 - 388)
definitionCHROMAT_FILE: MSMg01no435_f08.b1 PHD_FILE: MSMg01no435_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:01 2005CHROMAT_FILE: MSMg01no435_f08.g1 PHD_FILE: MSMg01no435_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGAATGTACTCTGGTCCTCATGCTGGTGTGTATCAAACACTTACCA
CTGAGCCATCTCCCCAGCTATAGTTTTGTTTCCTTTTATGCTAAAAGTTT
TTTTTTCTCTTTCTTCTGTCTTTGCTCTCTTTCATCCCAGCAATGACCTA
AATTCAGCTTCTTATAAATTAATCCTCCTTTAAGCCAGTCACCATCTGTT
CTGGCTCTGAAGCCTGAGAGTTCATCCTCTGACAATTTTTCTTGCAGCTA
ATCTTTGTACAAAGTGCTTTTTAGTTGATAGAATTTACATGTCATTCGTG
TTTTCTTAGGATAGTAGAGAATGACTTTTGAGCAAGCATCTAAATGTTAT
TTAAGAAATATTTTAAGCCGGGTGTGGTGGCACATGCCTTTAATCTCAGC
ATTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTGGAGGCCAGCCTGGTT
TACAGAGTGGATTCCAGTACAGCCACGGCTATACAGAGAAATCTTGTCTT
CTAAAACCTACTAAATTAACCCCTTAGCCCTATATACCCTACCCCCATTA
TTTTACTTTTTCGGGTCGGGGGTCCCCCCTCTTTTTTCCTTTTTTTTTAC
GAAAAATTACCCCAATTTTTTTTTCTCCCCCTATCCGTTCCCCCCTATAT
AACCGTGTCCAACCCCACATCCACCCAATTTATTTTTTCTTTCACCCTTT
TTATTTTCTTCAATTTCCCCCCCTCCCC

TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTATTACTCCCTTCTACTGTT
TATTAATTATTCTCAGGTTTTATTTAGTCAGTTTGAGATAGAGTGTTTCT
GGGTAGCCCTGGCTGGTCTGGAATTCACTGTGTAGACCAGACTAGCCTCA
GGCCTGTGATCTCCTTACCTCTGCCTCCTCAGTGTTGAGGTCACAGGATT
GGGACTACCACATCCAGATTCTTAATTCACCTTAGGAATCCAATTAAAAA
TATTTGTATTTTGGACTGGCGAGATGGCTCAGCAGGTAAGAGCACTGACT
GCTCTTCTGTGGTCCTGAGTTCAACTCCCAGCAACCACATGGTGGCTCAC
AACCAGACTGTAATGGAAATCTGATGCCTTCTTCTGGTGTGGCTGCAGAA
ATCTCCCGCCCACCGGGGATTCACTCCTTAAAAATAAATCTTCACCAAAA
ATATCTTCTCTCCATCGCCTTTTTGGCTGTTCTACAGGTTTTCGCCTCTT
CCGCCTTTTCTTTATCCCCCCTCTTGAATCTTTTCTCTCTTTTCCTCCAC
CCGCCTTTTTCTGTTCCTTCGATTCATAGACACACTTACCTTTTCTTTTT
TCCTCCGGTATCTTTTACACTCTCCCTTCCTCTCCGCTTGTTCCTCCCCT
TTTATCATTACTACTACTTGCCCCTTTTTGTTCTTTGTCTCTTCGTTTCT
TCCCCCCCGTGTTTATTTTCCTTTCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_f08.b1 MSMg01no435_f08.b1 CHROMAT_FILE:
MSMg01no435_f08.b1 PHD_FILE: MSMg01no435_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:01 2005
         (433 letters)



>mm_chr14_52727507_52728339
          Length = 833

 Score =  826 bits (427), Expect = 0.0
 Identities = 430/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctgaatgtactctggtcctcatgctggtgtgtatcaaacacttaccactgagcca 62
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctgaatggactctggtcctcatgctggtgtgtatcaaacacttaccactgagcca 262

                                                                       
Query: 63  tctccccagctatagttttgtttccttttatgctaaaagtttttttttctctttcttctg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctccccagctatagttttgtttccttttatgctaaaagtttttttttctctttcttctg 322

                                                                       
Query: 123 tctttgctctctttcatcccagcaatgacctaaattcagcttcttataaattaatcctcc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tctttgctctctttcatcccagcaatgacctaaattcagcttcttataaattaatcctcc 382

                                                                       
Query: 183 tttaagccagtcaccatctgttctggctctgaagcctgagagttcatcctctgacaattt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttaagccagtcaccatctgttctggctctgaagcctgagagttcatcctctgacaattt 442

                                                                       
Query: 243 ttcttgcagctaatctttgtacaaagtgctttttagttgatagaatttacatgtcattcg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttcttgcagctaatctttgtacaaagtgctttttagttgatagaatttacatgtcattcg 502

                                                                       
Query: 303 tgttttcttaggatagtagagaatgacttttgagcaagcatctaaatgttatttaagaaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgttttcttaggatagtagagaatgacttttgagcaagcatctaaatgttatttaagaaa 562

                                                                       
Query: 363 tattttaagccgggtgtggtggcacatgcctttaatctcagcatttgggaggcagaggca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tattttaagccgggtgtggtggcacatgcctttaatctcagcatttgggaggcagaggca 622

                      
Query: 423 ggtggatttct 433
           |||||||||||
Sbjct: 623 ggtggatttct 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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