BAC Information

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BAC

Clone NameMSMg01-436J13
Chromosome14 (Build37)
Map Location 56,124,491 - 56,124,735
singlet/doubletsinglet
Overlap geneBC036313
Upstream genePrmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4
Downstream geneCpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436J13.T7 (MSMg01no436_j13.b1)MSMg01-436J13.TJ (MSMg01no436_j13.g1)
ACCAG527625AG527626
length736792
length of high quality
(start - end)		575 (48 - 622)244 (73 - 316)
definitionCHROMAT_FILE: MSMg01no436_j13.b1 PHD_FILE: MSMg01no436_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:43 2005CHROMAT_FILE: MSMg01no436_j13.g1 PHD_FILE: MSMg01no436_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTATCCTTGAGCCCCATTTTTAATGGGGTTATTTGATT
TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGTATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTTA
TGAGGTCCCATTTGTCGATTCTCGATCTTACAGCAAAAGCCATTGCTGTT
CTATTCAGGAATTTTTCCCCTGTTTCCATATCTTCGAGGCTTTTCCCTAT
TTTCTCCTCTATAAGTTTTAGTGTCTCTGGTTTTGTGTGGAGTTCCTTAA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGC
ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTTTTCCACTGGGTGGTTTTTACTCCCTTGTCAAAGATCAAGT
GACCATAGCTGTGTGAGTTCATTTCTGGGTCTTCAATTCTATTCCATTGG
TCTACTTGTCTGTCTCTATACCAGTACCATGCAATTTTTATCACAATTGC
TCTGTATTAAAGCTTTAGGCCAGGCTTGGTGATTCCACCAGAGGTTCTTT
TTATCTTTCACGTGGAAACTGAACAATACTCTTCTC

CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCAGGACCATCCACAAGACATTTCTCA
TGTTTCCTTAACACTGGGGAAAACACCTGTGCTCTGAAGTTTGNCTTTTT
TTTTTTTTTTTTTTTTTTTTTTGATGTATCTTTAGACACGTTTACATGGT
TGACTGACCACTACCTCCCCTTGGGTGAACATTCCCCAGTATAGGGGATC
ATGGCATTCATCTTTTTGAGCTTTTGGTGCTGCTGGCTGAAAAAGGGGCT
TTACGTACCTATGTTTTTTTTTGCCTCTGCTCGGCGCATGGCGCTGAAGC
TTGGCTTGGAGCTTTGTGGGGGCGGTGGTGGCTTCCAGGCTCCAGGCCCT
GGAGTTGGGGGGAGGTCTTTTTTATTTTTTTTTTTTCTTCCTTTCTTTTT
TTTTTTTCTTCCTTTTCATCTTTTTTATTTTTTTTCCTCACATCTTCTTC
TCTTTTTTTTTTTTCTTCTTTTTTTTTTTTCTTTTTACTCCTCGTTATTT
TTTCTTTCCTTTTTCCCTTTTTCTCTTTTTCTTATTATTTTTTTCTTTTA
TTCTCTCCCTATCCCTTATTTCTTTTTATCTCTTTTCTCCTCTTCTTTTT
TTTCTCTCCTCTATCTTTTTCTTTTTTTTTTTATCTTTCCTTTTCTTCCC
ATCCTCTCTTATTTTTTTTTTTTTTTCTCTCCTCCTCCTCTTCTCTTTTC
CATCTTCTTCTTCTCTCCCCCCTTCTCTCTCTTACTTCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_j13.g1 MSMg01no436_j13.g1 CHROMAT_FILE:
MSMg01no436_j13.g1 PHD_FILE: MSMg01no436_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:43 2005
         (244 letters)



>mm_chr14_56124191_56124834
          Length = 644

 Score =  429 bits (222), Expect = e-125
 Identities = 238/245 (97%), Gaps = 3/245 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaggaccatccacaagacatttctcatgtttccttaacactggggaaaacacctgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttcaggaccatccacaagacatttctcatgtttccttaacactggggaaaacacctgtgc 486

                                                                       
Query: 61  tctgaagtttgncttttttttttttttttttttttttttt---gatgtatctttagacac 117
           ||||||||||| ||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 485 tctgaagtttgtctttttttttttttttttttttttttttttggatgtatctttagacac 426

                                                                       
Query: 118 gtttacatggttgactgaccactacctccccttgggtgaacattccccagtataggggat 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 425 gtttacatggttgactgaccactacctccccttgggtgaacattccccagtgtaggggac 366

                                                                       
Query: 178 catggcattcatctttttgagcttttggtgctgctggctgaaaaaggggctttacgtacc 237
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 365 catggcattcatctttttgagcttttggtgctgctggctgagaaaggggctttacgtacc 306

                
Query: 238 tatgt 242
           |||||
Sbjct: 305 tatgt 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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