BAC Information

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BAC

Clone NameMSMg01-436L13
Chromosome14 (Build37)
Map Location 123,839,065 - 123,977,889
singlet/doubletdoublet
Overlap geneVgcnl1
Upstream geneEG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneItgbl1, LOC668700, Fgf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436L13.T7 (MSMg01no436_l13.b1)MSMg01-436L13.TJ (MSMg01no436_l13.g1)
ACCAG527721AG527722
length710704
length of high quality
(start - end)
633 (78 - 710)543 (75 - 617)
definitionCHROMAT_FILE: MSMg01no436_l13.b1 PHD_FILE: MSMg01no436_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:52 2005CHROMAT_FILE: MSMg01no436_l13.g1 PHD_FILE: MSMg01no436_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,839,065 - 123,839,695)(123,977,337 - 123,977,889)
sequence
NNGGTAAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAG
GATCCGCGGAATTCTAAGAGATGCGGTATCTGATATTTTCCTAATTTTTT
AACAAAATTCTTATATATATATATATATATATATATATATATATATATAT
GTATATTCTGTCATCTATCTCTATGTATCTCAATCTATCTCATTACCATC
TACCTATCTATCTTCTTTCTATCTATCTACCTGTCTGTCTATACATCTAT
CTATCTATCTTTGTATTTTTTTAAGCTGCAAAGGACTGATTAAGATGAAC
GTTTTAATTTGTATTGGGAACTATTTTATTAATTTTAAACTTTGTATATA
ACAGAAAATTGAGTAGTCACTGTTCAGTCTTATTACAGAGTAATAGCACA
GAATAAGTAATACTTATTCTGTGCTAGGTCATCTGACTACCATTTAGGAT
GTGGTGTGGCGTGTTATAAATGCTCTCCATGTTGTTTAGGAGTGATAGTA
CTGACTCCTATGTGGAGAAACAGTGCTAATCAGGTTGTTGTTATCTTTTC
CTTCAACACTTTTTAATTATGTATTACTACTTTGTTTTATTTCATGGGTA
CCATAGACAAACATGACAGATAGCAAGGAGCATAAATATAGGTTGTATTT
TTTAATTTATGCTAGACTCAACAATACATTTAATAATGGATTCATCTTTG
TATCATAGAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGATAGCCAGGGCCACACAGAGAA
ACCCTGTCTCAAAAAAACAAAACAAAACAAAACAAGACAAAACAAAACAA
AACAAAACAAAACAAAACGTAACTAAGAAATTCTCTCTATTTTGAAAGTG
ATAAAGTGATATCACAGGTTATCTGTGGAAATACTATGAATGGAATTGTA
ATTGATCTAATACAACTGGGGCTGCTGGGGCTAAACAGGGTGTTAGTACA
TGTTCTTTCCTTACAAATGGAATTTCTGGTGAGACTTCTAAAAAATTTCA
GGATTATATTTGGGGAGGGAGAGGCTTTAAGCAGTTGTTAATTTTGTTGA
AGTTCTTTTCTATTGGTGAGTGGTTTTAACCAGAGACCTGGTGAAAGGGT
CCTCTCTGTTCTCATAACTTCATAAAGTCCTTGTCCTCTCTGTTGCCTCA
GGAATCCCTAGATATTCTTGATCATGTTCAATGTTTCAACTCTTAAAAGA
GTTGTAATGATAACTATCTCCTGTGCACCAAGTAAAAGGAAAAGGCTAAG
AATAGGATGCAGGGTGGTCAGAGAGGATGCTAGGTACTGATGCCTATCTA
TGGAGAGATCAAAAGAACTGGCTCAGCCCCTAAAATATTAGAATGTATTT
TTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_l13.b1 MSMg01no436_l13.b1 CHROMAT_FILE:
MSMg01no436_l13.b1 PHD_FILE: MSMg01no436_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:52 2005
         (633 letters)



>mm_chr14_123838863_123839895
          Length = 1033

 Score = 1181 bits (611), Expect = 0.0
 Identities = 627/633 (99%), Gaps = 2/633 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctgatattttcctaattttttaacaaaattcttatatatatatatatatatatatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 atctgatattttcctaattttttaacaaaattcttatatatatatatatatatatatata 262

                                                                       
Query: 61  tatatatatatatgtatattctgtcatctatctctatgtatctcaatctatctcattacc 120
           ||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tatatatgtat--gtatattctgtcatctatctctatgtatctcaatctatctcattacc 320

                                                                       
Query: 121 atctacctatctatcttctttctatctatctacctgtctgtctatacatctatctatcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctacctatctatcttctttctatctatctacctgtctgtctatacatctatctatcta 380

                                                                       
Query: 181 tctttgtatttttttaagctgcaaaggactgattaagatgaacgttttaatttgtattgg 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttgtatttttttaagctgcaaaggactgattaagatgaacgttttaatttgtattgg 440

                                                                       
Query: 241 gaactattttattaattttaaactttgtatataacagaaaattgagtagtcactgttcag 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaactattttaaaaattttaaactttgtatataacagaaaattgagtagtcactgttcag 500

                                                                       
Query: 301 tcttattacagagtaatagcacagaataagtaatacttattctgtgctaggtcatctgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttattacagagtaatagcacagaataagtaatacttattctgtgctaggtcatctgac 560

                                                                       
Query: 361 taccatttaggatgtggtgtggcgtgttataaatgctctccatgttgtttaggagtgata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taccatttaggatgtggtgtggcgtgttataaatgctctccatgttgtttaggagtgata 620

                                                                       
Query: 421 gtactgactcctatgtggagaaacagtgctaatcaggttgttgttatcttttccttcaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtactgactcctatgtggagaaacagtgctaatcaggttgttgttatcttttccttcaac 680

                                                                       
Query: 481 actttttaattatgtattactactttgttttatttcatgggtaccatagacaaacatgac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actttttaattatgtattactactttgttttatttcatgggtaccatagacaaacatgac 740

                                                                       
Query: 541 agatagcaaggagcataaatataggttgtattttttaatttatgctagactcaacaatac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agatagcaaggagcataaatataggttgtattttttaatttatgctagactcaacaatac 800

                                            
Query: 601 atttaataatggattcatctttgtatcatagaa 633
           |||||||||||||||||||||||||||||||||
Sbjct: 801 atttaataatggattcatctttgtatcatagaa 833



 Score = 85.8 bits (44), Expect = 9e-21
 Identities = 47/48 (97%)
 Strand = Plus / Minus

                                                          
Query: 35 tatatatatatatatatatatatatatatatatatatatgtatattct 82
          ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 83 tatatatatatatatatatatatatatatatatatatatatatattct 36



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                       
Query: 35 tatatatatatatatatatatatatatatatatatatatgtatat 79
          ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 85 tatatatatatatatatatatatatatatatatatatatatatat 41



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                       
Query: 35 tatatatatatatatatatatatatatatatatatatatgtatat 79
          ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 87 tatatatatatatatatatatatatatatatatatatatatatat 43



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                       
Query: 35 tatatatatatatatatatatatatatatatatatatatgtatat 79
          ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 89 tatatatatatatatatatatatatatatatatatatatatatat 45



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                       
Query: 35 tatatatatatatatatatatatatatatatatatatatgtatat 79
          ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 91 tatatatatatatatatatatatatatatatatatatatatatat 47



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                       
Query: 35 tatatatatatatatatatatatatatatatatatatatgtatat 79
          ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 93 tatatatatatatatatatatatatatatatatatatatatatat 49



 Score = 78.1 bits (40), Expect = 2e-18
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                      
Query: 36 atatatatatatatatatatatatatatatatatatatgtatat 79
          |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 94 atatatatatatatatatatatatatatatatatatatatatat 51



 Score = 72.3 bits (37), Expect = 1e-16
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                       
Query: 35 tatatatatatatatatatatatatatatatatatatatgtatat 79
          |||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 99 tatacatatatatatatatatatatatatatatatatatatatat 55



 Score = 72.3 bits (37), Expect = 1e-16
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                        
Query: 35  tatatatatatatatatatatatatatatatatatatatgtatat 79
           |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 101 tatatacatatatatatatatatatatatatatatatatatatat 57



 Score = 70.3 bits (36), Expect = 4e-16
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                       
Query: 36  atatatatatatatatatatatatatatatatatatatgtatat 79
           ||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 102 atatatacatatatatatatatatatatatatatatatatatat 59



 Score = 64.5 bits (33), Expect = 2e-14
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                            
Query: 40  atatatatatatatatatatatatatatatata 72
           |||||||||||||||||||||||||||||||||
Sbjct: 269 atatatatatatatatatatatatatatatata 237



 Score = 64.5 bits (33), Expect = 2e-14
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                            
Query: 38  atatatatatatatatatatatatatatatata 70
           |||||||||||||||||||||||||||||||||
Sbjct: 269 atatatatatatatatatatatatatatatata 237



 Score = 64.5 bits (33), Expect = 2e-14
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                            
Query: 36  atatatatatatatatatatatatatatatata 68
           |||||||||||||||||||||||||||||||||
Sbjct: 269 atatatatatatatatatatatatatatatata 237



 Score = 62.6 bits (32), Expect = 9e-14
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 35  tatatatatatatatatatatatatatatata 66
           ||||||||||||||||||||||||||||||||
Sbjct: 268 tatatatatatatatatatatatatatatata 237



 Score = 62.6 bits (32), Expect = 9e-14
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 42  atatatatatatatatatatatatatatatat 73
           ||||||||||||||||||||||||||||||||
Sbjct: 269 atatatatatatatatatatatatatatatat 238



 Score = 60.7 bits (31), Expect = 3e-13
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                      
Query: 36  atatatatatatatatatatatatatatatatatatatgtata 78
           ||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct: 279 atatacatacatatatatatatatatatatatatatatatata 237



 Score = 60.7 bits (31), Expect = 3e-13
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 35  tatatatatatatatatatatatatatatatatatatat 73
           |||| ||| ||||||||||||||||||||||||||||||
Sbjct: 278 tatacatacatatatatatatatatatatatatatatat 240


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 162
Number of extensions: 57
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 20
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no436_l13.g1 MSMg01no436_l13.g1 CHROMAT_FILE:
MSMg01no436_l13.g1 PHD_FILE: MSMg01no436_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:52 2005
         (543 letters)



>mm_chr14_123977043_123977985
          Length = 943

 Score = 1004 bits (519), Expect = 0.0
 Identities = 540/553 (97%), Gaps = 10/553 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggatagccagggccacacagagaaaccctgtctcaaaaaaacaaaacaaaacaaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 caggatagccagggccacacagagaaaccctgtctcaaaaaaacaaaacaaaacaaaaca 788

                                                                       
Query: 61  ag----------acaaaacaaaacaaaacaaaacaaaacaaaacgtaactaagaaattct 110
           ||          ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 agacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacgtaactaagaaattct 728

                                                                       
Query: 111 ctctattttgaaagtgataaagtgatatcacaggttatctgtggaaatactatgaatgga 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ctctattttgaaagtgataaagtgatatcacaggttatctgtggaaatactatgaatgga 668

                                                                       
Query: 171 attgtaattgatctaatacaactggggctgctggggctaaacagggtgttagtacatgtt 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 attgtaattgatctaatacaactggggctgctggggctaaacagggtgttagtacatgtt 608

                                                                       
Query: 231 ctttccttacaaatggaatttctggtgagacttctaaaaaatttcaggattatatttggg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ctttccttacaaatggaatttctggtgagacttctaaaaaatttcaggattatatttggg 548

                                                                       
Query: 291 gagggagaggctttaagcagttgttaattttgttgaagttcttttctattggtgagtggt 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gagggagaggctttaagcagttgttaattttgttgaagttcttttctattggtgagtggt 488

                                                                       
Query: 351 tttaaccagagacctggtgaaagggtcctctctgttctcataacttcataaagtccttgt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tttaaccagagacctggtgaaagggtcctctctgttctcataacttcataaagtccttgt 428

                                                                       
Query: 411 cctctctgttgcctcaggaatccctagatattcttgatcatgttcaatgtttcaactctt 470
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 427 cctctctgttgcctcaggaatccctagatattcttgatcatgttcaaggtttcaactctt 368

                                                                       
Query: 471 aaaagagttgtaatgataactatctcctgtgcaccaagtaaaaggaaaaggctaagaata 530
           ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 367 aaaagagttgtaatgataactgtctcctgtgcaccaaggaaaaggaaaaggctaagaata 308

                        
Query: 531 ggatgcagggtgg 543
           |||||||||||||
Sbjct: 307 ggatgcagggtgg 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)