Query= MSMg01no436_n23.b1 MSMg01no436_n23.b1 CHROMAT_FILE:
MSMg01no436_n23.b1 PHD_FILE: MSMg01no436_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:04 2005
(563 letters)
>mm_chr14_115242880_115243843
Length = 964
Score = 1067 bits (552), Expect = 0.0
Identities = 558/560 (99%), Gaps = 1/560 (0%)
Strand = Plus / Plus
Query: 1 ttaaatataaataaccaacataaatgagaaaataatccttaaaaaacgagggaattttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaatataaataaccaacataaatgagaaaataatccttaaaaaacgagggaattttga 260
Query: 61 gcttgctacaggtagcatccaaaagttaagagttaaatatgcccagagtccagtgtgata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttgctacaggtagcatccaaaagttaagagttaaatatgcccagagtccagtgtgata 320
Query: 121 cagcaccacatgtggacattttagatttttgtgagaacttctggagctaattgatacatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcaccacatgtggacattttagatttttgtgagaacttctggagctaattgatacatg 380
Query: 181 actatgaacatataaaggttataaataagacttagagaatcccatggatgccataaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actatgaacatataaaggttataaataagacttagagaatcccatggatgccataaaaca 440
Query: 241 gctcagtgagagttctgccaagtgtttctgctaattatacaatcataaccaattaaaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcagtgagagttctgccaagtgtttctgctaattatacaatcataaccaattaaaaaa 500
Query: 301 a-tactccctaaaattttttcagtaatattattttctaaggatttatttttcgttaactt 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatactccctaaaattttttcagtaatattattttctaaggatttatttttcgttaactt 560
Query: 360 gtgtgtgtgcttgcacacatgtgtgatgcatatctgtgtgcatgtgagtgtaaatgactg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtgtgtgcttgcacacatgtgtgatgcatatctgtgtgcatgtgagtgtaaatgactg 620
Query: 420 cagagaacagaagagggtttatatcctaaggaactggagttacagactgttgtgagctgc 479
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 cagagaacagaagagggtttatatcccaaggaactggagttacagactgttgtgagctgc 680
Query: 480 cctcgaggttctgggaaccaagctgggatcatctgaaaaaacagtacttactttaaagat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctcgaggttctgggaaccaagctgggatcatctgaaaaaacagtacttactttaaagat 740
Query: 540 aaaccatttctccagcttta 559
||||||||||||||||||||
Sbjct: 741 aaaccatttctccagcttta 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 964
Length adjustment: 10
Effective length of query: 553
Effective length of database: 954
Effective search space: 527562
Effective search space used: 527562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_n23.g1 MSMg01no436_n23.g1 CHROMAT_FILE:
MSMg01no436_n23.g1 PHD_FILE: MSMg01no436_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:04 2005
(517 letters)
>mm_chr14_115347181_115348096
Length = 916
Score = 928 bits (480), Expect = 0.0
Identities = 511/528 (96%), Gaps = 11/528 (2%)
Strand = Plus / Minus
Query: 1 ctatcagcttcctgtgtctcacacacaactcttgcctttatcacgagagtggggcttcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctatcagcttcctgtgtctcacacacaactcttgcctttatcacgagagtggggcttcta 605
Query: 61 gaacaaaagaggaagccaacagctgtatttgccctcacccggagactgaagtctggacta 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 604 gaacaaaagaggaagccaacagctgtacttgccctcacccggagactgaagtctggacta 545
Query: 121 gcgctcactttccgtgtttgctctgagggctttcacaatgttctaagtaagacacatatg 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 544 gcgctcactttccgtgtttgctctgcgggctttcacaatgttctaagtaagacacatatg 485
Query: 181 catcatgaaatcatcatacgatatgcacacacacagtctggggagggggagtgtcttctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 catcatgaaatcatcatacgatatgcacacacacagtctggggagggggagtgtcttctg 425
Query: 241 ccagttaaagaattaagaagcaggagaaatgtggagcagcagagaaaactctaatgctgc 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 424 ccagttaaagaattaagaagcaggagaaatctggagcagcagagaaaactctaatgctgc 365
Query: 301 agacagcaacacacagaatcagcaactgaagaaagacatttattggggttaagaactatg 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agacagcaacacacagaatcggcaactgaagaaagacatttattggggttaagaactatg 305
Query: 361 ggtttgaaacagacacacagagaaaaggaccctccttctccagagcagagcgggccttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggtttgaaacagacacacagagaaaaggaccctccttctccagagcagagcgggccttgg 245
Query: 421 ggagccaaaaattccagtcaccctttaaggcctttttt-----------tgttgtttatt 469
|||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 244 ggagccaaaaattccagtcaccttttaaggccttttttgttgttgttgttgttgtttatt 185
Query: 470 tatcctggaagagtttttctccactaatttagggttggccagtttgaa 517
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 184 tatcctggaagagtttttctccactaatttagggttggtcagtttgaa 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 916
Length adjustment: 10
Effective length of query: 507
Effective length of database: 906
Effective search space: 459342
Effective search space used: 459342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
