BAC Information

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BAC

Clone NameMSMg01-437F13
Chromosome14 (Build37)
Map Location 91,272,173 - 91,272,753
singlet/doubletsinglet
Overlap genenone
Upstream geneEG328451, LOC100043336
Downstream geneEG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437F13.T7 (MSMg01no437_f13.b1)MSMg01-437F13.TJ (MSMg01no437_f13.g1)
ACCAG528201AG528202
length772763
length of high quality
(start - end)
585 (44 - 628)436 (73 - 508)
definitionCHROMAT_FILE: MSMg01no437_f13.b1 PHD_FILE: MSMg01no437_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:42 2005CHROMAT_FILE: MSMg01no437_f13.g1 PHD_FILE: MSMg01no437_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTACAAATCATATCTGATCACATGATAATCAGCAGAGATTTAAACAAG
GGTAACAATTTTGCTTTACTTAGGCAATTATAGTACTTCGCATCGATTTA
CTCATAACTTTCTATTTGTTTTTGATTAATTACCTCATCATATTTGTTTT
TGTCTCATCAGTCCTCTGGATTCTTTTTATTCCTTCATGCCTATGGAATT
CTTTCTGCTTCCCCTAGGAACAGCTGTTGCTTCCTGAATATTCAGGCCCC
AAGTATGGCTAAGTTCCATCTTATATAAATGATAGTGCATTGCATTGATA
CATGGCCTTCACACTGGAGAAAGTAATCTTGTTTGTCTTGGCTTTCTACT
TGCATTTTGGAAGAGGGATTCTACCTGAGTCTTGGAGGAGTTATGCTTCC
TAACCTAACCTCACAATTTAGTATGAGTATTAAGAAAAAGCATCTTACCA
TCTACTGTGCTGTATAAGATGGCACATGAAACAAGCTACAGCGTGCTGTT
GGGTGTATAAATGGCTTAACTCACTTATGTTCATTTCCGTTTGCATTGCC
TTTATGTACTCCATCTGTACCACAACTGAAATAGAGTGTTCGTGCTCCAC
GAGTATATATGTCAGGGCATATGCCCAAGTCTATACTTCCCAGTGGATTA
CACCATTACTATTCCGATATGAGNTAACATCTTACAGAAGTATCTCACTC
ATTTCACTCCTAAATAAACTCT
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATG
AGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCC
TGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCT
GGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCT
CTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTG
ATTTTGTTACCCTCTATCAGCTTGCGTGGGAGACAAGCTCTCTTCTCTGA
GTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGA
AGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGG
CCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTG
GCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTC
TTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCGCCCCAG
AATCTCTGCGATTCTCTCGCCCGTCCCAGAAACAGCTGGCACTCTGTATT
CCACCCGGTTACCCGTGCACCCTGGCCTCCGCGGAGTCCCGTTATCAATA
AGGTTCCCTCCCGGGTTTGTTGCTTATACCTTTCATGTCTGTTTGACCCC
CGTGGTTCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_f13.b1 MSMg01no437_f13.b1 CHROMAT_FILE:
MSMg01no437_f13.b1 PHD_FILE: MSMg01no437_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:42 2005
         (585 letters)



>mm_chr14_91271969_91272953
          Length = 985

 Score = 1116 bits (577), Expect = 0.0
 Identities = 580/581 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacaaatcatatctgatcacatgataatcagcagagatttaaacaagggtaaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacaaatcatatctgatcacatgataatcagcagagatttaaacaagggtaaca 264

                                                                       
Query: 65  attttgctttacttaggcaattatagtacttcgcatcgatttactcataactttctattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attttgctttacttaggcaattatagtacttcgcatcgatttactcataactttctattt 324

                                                                       
Query: 125 gtttttgattaattacctcatcatatttgtttttgtctcatcagtcctctggattctttt 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttttgattaatcacctcatcatatttgtttttgtctcatcagtcctctggattctttt 384

                                                                       
Query: 185 tattccttcatgcctatggaattctttctgcttcccctaggaacagctgttgcttcctga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattccttcatgcctatggaattctttctgcttcccctaggaacagctgttgcttcctga 444

                                                                       
Query: 245 atattcaggccccaagtatggctaagttccatcttatataaatgatagtgcattgcattg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atattcaggccccaagtatggctaagttccatcttatataaatgatagtgcattgcattg 504

                                                                       
Query: 305 atacatggccttcacactggagaaagtaatcttgtttgtcttggctttctacttgcattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atacatggccttcacactggagaaagtaatcttgtttgtcttggctttctacttgcattt 564

                                                                       
Query: 365 tggaagagggattctacctgagtcttggaggagttatgcttcctaacctaacctcacaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggaagagggattctacctgagtcttggaggagttatgcttcctaacctaacctcacaat 624

                                                                       
Query: 425 ttagtatgagtattaagaaaaagcatcttaccatctactgtgctgtataagatggcacat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttagtatgagtattaagaaaaagcatcttaccatctactgtgctgtataagatggcacat 684

                                                                       
Query: 485 gaaacaagctacagcgtgctgttgggtgtataaatggcttaactcacttatgttcatttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaaacaagctacagcgtgctgttgggtgtataaatggcttaactcacttatgttcatttc 744

                                                    
Query: 545 cgtttgcattgcctttatgtactccatctgtaccacaactg 585
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cgtttgcattgcctttatgtactccatctgtaccacaactg 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)