BAC Information

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BAC

Clone NameMSMg01-437M12
Chromosome14 (Build37)
Map Location 92,745,760 - 92,746,218
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665377
Downstream geneLOC638252, Pcdh9, LOC668566
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437M12.T7 (MSMg01no437_m12.b1)MSMg01-437M12.TJ (MSMg01no437_m12.g1)
ACCAG528532AG528533
length1,126783
length of high quality
(start - end)
---459 (81 - 539)
definitionCHROMAT_FILE: MSMg01no437_m12.b1 PHD_FILE: MSMg01no437_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:17 2005CHROMAT_FILE: MSMg01no437_m12.g1 PHD_FILE: MSMg01no437_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGACCGATATATATTTGCGGCGAATTACATAATAGCTTTCTCTATAGAA
GACAGTCAGAAATATGACAATCGCGCGGATGTGCTATTCAACACTATTTC
GCCAATACCTTCGGAGAAACAAATATACAATATNTCGACACGATAGGATG
TCATTAATGCTTCCTACGCGGTATACTTACTTACACCTCACTACTTCTCG
ATCAACTAATAAATACATACATAAATGCTAGTTCACTCGAATACGGCCAA
TGCGTTTACAACCGTAGAACCCTAGGGCGCTGGCGCCGGGGTATATGTTC
AGCAGTACCTCATTATATTCAATACTCTATACACGCACATATACCGCACT
CGTTATATTAACACATAAAAACGAGCGACTGATAANCATACAGTATACGT
CTTGGAGACTTTGTGCATGATGATCATGGTAGGCCTATGTAGACGCAGTT
GAGTGGATTTTACATGGTGTTTAGTGCGAATTAAAAGCACAGCGTGTCCC
TCTATTCTATCTTTAACGTTACCCAAGTTACTAACTAGACTCCTTATTTT
CCGCCCACATTGTTTCTATATTTTCATTCTGGCAGAGATGTAAGGTAGGA
TGTGCTACTAAGTATCACGAGAAGCCTCAACAGCGCTCTCTCATAAATCA
TTGGCATGATAACATAAAAGCACACGCGTTAAACTAATGCTGAGATAATG
AGTACAAGGTGCGTGAGACTAATATAATTGTATATTCGCGCGCGCTTCCT
CGCCTGTTCATTGTAATGCGACAGTCGCTTATGATAATCAGAACACTCCT
CGAACTTGTTGCGCTTTGTTATTATCTATGCCCGCACTGCATCGTACCTG
TATATTCTACCGAACGCTGTCGATGACCCGCTTGATTGCGCCTGCACAGG
TCTATATACACTTTCAACATATCGCTTCTACGTACGCCTACTGCAACTTT
TATTCACACCACTCCACGTATCATGCCCTTAACATTCCGACTTATTCAAT
GTCAATTACATATGTGTGAGTGCAGATAGCTGATCTCCTCGCCGGCACTC
GCGCAACTTAGCTAACCGTCTGTCTATCGTAGTGTCTGAAGGAATGTCTA
TATTGGCGCCGAAGCAGCTTATTATG
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATTAAAACATTGAGAAC
AACTAAATGATTCTATATAGCAAGTTTTGTAAAATGTATATCTATACATA
GAGTATGAAAAATAGCTATTTTTCAATTTGCACATGAAATAGTAGATTTT
TGTATGAATTAGTGATTTTTAATGTGGCCATCGAGGATTACTCATCTTTC
TGTGCTCTTTGGGAACACTCTTATCATTCCAGTCTATGTTAGCAATGGAA
AATTCTAACTCAAAAATACAGAAAAATTTTTCACACTACTCACACCCAGA
ATATAGTCAAATCTTTATCTACACACCTATAAATATGGTGAGATGACTTG
AAAACTACATTATTTAATGAACATTGGAAGATAGGACTGGACTCTAGTTA
TAAATGAAGCAACTTCCTACAATGAAATCTTGGAGTTAGTGCAAGGACTG
AAGAGGCTGAAGGAGTTTGCAACCCCATAGGAAGAATAACAATATTCATC
TACCCAGACCCCGTAAATTTCTCTAGGGACTTAACCACCAATTTTAGCGT
ACACATGGCGGAACCCTTGGCTTCCCACTGCATGTGTATCCTAAGTATGT
TCCCTGTTCCGGCTCTCTTGTCATTTCCCCTCCCCTCGGTCTTTGGGTTA
ACTCTTTTCTTTTCCTTTTCTCTTTATCCTTTTCCCTATTCCCCTTTTTC
TTTTTCTTTTTTTATCTTTCTTCCCTACATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_m12.g1 MSMg01no437_m12.g1 CHROMAT_FILE:
MSMg01no437_m12.g1 PHD_FILE: MSMg01no437_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:17 2005
         (459 letters)



>mm_chr14_92745630_92746488
          Length = 859

 Score =  857 bits (443), Expect = 0.0
 Identities = 455/463 (98%), Gaps = 8/463 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccattaaaacattgagaacaactaaatgattctatatagcaagttttgtaaaatgtata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tccattaaaacattgagaacaactaaatgattctatatagcaagttttgtaaaatgtata 530

                                                                       
Query: 61  tctatacatagagtatgaaaaatagctatttttcaatttgcacatgaaatagtagatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tctatacatagagtatgaaaaatagctatttttcaatttgcacatgaaatagtagatttt 470

                                                                       
Query: 121 tgtatgaattagtgatttttaatgtggccatcgaggattactcatctttctgtgctcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tgtatgaattagtgatttttaatgtggccatcgaggattactcatctttctgtgctcttt 410

                                                                       
Query: 181 gggaacactcttatcattccagtctatgttagcaatggaaaattctaactcaaaaataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gggaacactcttatcattccagtctatgttagcaatggaaaattctaactcaaaaataca 350

                                                                       
Query: 241 gaaaaa----tttttcacactactcacacccagaatatagtcaaatctttatctacacac 296
           ||||||        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gaaaaacagg----tcacactactcacacccagaatatagtcaaatctttatctacacac 294

                                                                       
Query: 297 ctataaatatggtgagatgacttgaaaactacattatttaatgaacattggaagatagga 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctataaatatggtgagatgacttgaaaactacattatttaatgaacattggaagatagga 234

                                                                       
Query: 357 ctggactctagttataaatgaagcaacttcctacaatgaaatcttggagttagtgcaagg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ctggactctagttataaatgaagcaacttcctacaatgaaatcttggagttagtgcaagg 174

                                                      
Query: 417 actgaagaggctgaaggagtttgcaaccccataggaagaataa 459
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 actgaagaggctgaaggagtttgcaaccccataggaagaataa 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)