BAC Information

Click to search

BAC

Clone NameMSMg01-438B03
Chromosome14 (Build37)
Map Location 38,479,541 - 38,480,078
singlet/doubletsinglet
Overlap genenone
Upstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
Downstream geneLOC382871, LOC382872, Nrg3, LOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438B03.T7 (MSMg01no438_b03.b1)MSMg01-438B03.TJ (MSMg01no438_b03.g1)
ACCAG528751AG528752
length741736
length of high quality
(start - end)
622 (44 - 665)538 (77 - 614)
definitionCHROMAT_FILE: MSMg01no438_b03.b1 PHD_FILE: MSMg01no438_b03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:41 2005CHROMAT_FILE: MSMg01no438_b03.g1 PHD_FILE: MSMg01no438_b03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTAAGTAATATTTATCAGTAAGACAAATCAGCAACCTACAGATTTG
GAAAAAAACTTCAATAATTCCACATCCAATAGAGGACTAATAACCAAAAT
TTATAAAGAACTCAAGAAGCTAATCAACAGAAAATCAAACAACCCAATCG
AAAAAAAAAATGAGGTATAGAACTAAAGCAAGATTTCACAACTGAACAAT
ATCAAATAGCTGAAAAGCACCTAAAGAAACGTTCAAAGTCCTTAGTGATC
CGAGAAATGCAAATCAAAATGACCCTGAGATTCCCCTTTACACCAAGCAA
AATGGCTAAGACCAAAACCTCAAGGCACAACACATGTTGGCAAAGATGTA
GAGTAAGAGAAGTGCTCCTCCATTGCTGGTGGGATTGCAAACCAGTACAA
CCACTCTGGAAATCAATCTAAAGGTTTCTCAGAAAATTGGAAATCTATCT
ACCTGAAGACTCAGCTATACCACTCTTGGGAATATACCCAAAAGATGCTC
CACCATGCCACAGGGGCACATGTTCCCCTATGTCCATAGTGACCTTATTT
GTGAAAGCCTGAAGCTGGAAACAACCTAGATGTCCCATGACAGAAGAATC
GATACAGAAAATGTGGGTCATTTACAAATTGGAATACTACTCTGCTATTA
AGAATGAGGATATCCTGAGTTTTGCAGGTAATGGAGGGAAN
NCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCGTTCTGTTCAGTTGTTAGCCC
TGTTCATTTTGGCCAGACTTCTCATTGATCAGGTTGTCGTTTTCATTGCA
CCATGCTACAGAGCAAGCAGCACAGGATACAGGCCCTAGGTAAGAACAAA
TTCAAGTTTTCTGACTTTTAATTACTTTTATTCAAAGAAGTACGGATTTA
TATATGCTAATACAGATGAAAGTAGTTTATTACAGCAGCAGTGGGCTTGG
ATATAACCTCAGTTCTTGTCCTCCATAAAAGTCATAGCCCCTGGACTTTA
AGGTTCCCTACCTGATCATGTAGTCATGTCTACTAATAAATTCTATATCC
TGTCCATGAAAGAAGAGGAGCCTCTCATATTATTTTGAGAATTTTCCAAA
GGCAAAAATAAGTAGTTACATTTTATAAAGCCATAAATTCCATTATCCAA
AATAGTTTCTCATGTATTCTTGATCATCAAATGTATTCTCTGAGCAGCCC
TCCTCTCTAATTTCAAAACATTAACAAAAAAGTCTAAATAATTATAGCAA
GGCGTTATGTTTTCCTCAAAGCCATGCAGCCTCTCTTTGTCATATCACAC
TTCCAGCTTCTAGGATCCTTTCCCTTTCCTTGTTGGAGGCCAATCCTTAT
GGGCACTGATACTGCCATTTCCCCCCATCTAATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_b03.g1 MSMg01no438_b03.g1 CHROMAT_FILE:
MSMg01no438_b03.g1 PHD_FILE: MSMg01no438_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:42 2005
         (538 letters)



>mm_chr14_38479341_38480278
          Length = 938

 Score = 1009 bits (522), Expect = 0.0
 Identities = 534/538 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcgttctgttcagttgttagccctgttcattttggccagacttctcattgatcaggttg 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcgttctgttcagttgttagcccggttcattttggccagacttctcattgatcaggttg 260

                                                                       
Query: 61  tcgttttcattgcaccatgctacagagcaagcagcacaggatacaggccctaggtaagaa 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tcgttttcattgcaccatgctacagagcaagcagcacaggacacaggccctaggtaagaa 320

                                                                       
Query: 121 caaattcaagttttctgacttttaattacttttattcaaagaagtacggatttatatatg 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 caaattcaagttttctgacttttaattacttttattcaaagaagtatggatttatatatg 380

                                                                       
Query: 181 ctaatacagatgaaagtagtttattacagcagcagtgggcttggatataacctcagttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaatacagatgaaagtagtttattacagcagcagtgggcttggatataacctcagttct 440

                                                                       
Query: 241 tgtcctccataaaagtcatagcccctggactttaaggttccctacctgatcatgtagtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcctccataaaagtcatagcccctggactttaaggttccctacctgatcatgtagtca 500

                                                                       
Query: 301 tgtctactaataaattctatatcctgtccatgaaagaagaggagcctctcatattatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtctactaataaattctatatcctgtccatgaaagaagaggagcctctcatattatttt 560

                                                                       
Query: 361 gagaattttccaaaggcaaaaataagtagttacattttataaagccataaattccattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaattttccaaaggcaaaaataagtagttacattttataaagccataaattccattat 620

                                                                       
Query: 421 ccaaaatagtttctcatgtattcttgatcatcaaatgtattctctgagcagccctcctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaaaatagtttctcatgtattcttgatcatcaaatgtattctctgagcagccctcctct 680

                                                                     
Query: 481 ctaatttcaaaacattaacaaaaaagtctaaataattatagcaaggcgttatgttttc 538
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 ctaatttcaaaacattaacaaaaaagtctaaataattatagcaaggggttatgttttc 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)