BAC Information

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BAC

Clone NameMSMg01-438I17
Chromosome14 (Build37)
Map Location 26,091,865 - 26,092,102
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315, LOC100039411
Downstream geneZmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438I17.T7 (MSMg01no438_i17.b1)MSMg01-438I17.TJ (MSMg01no438_i17.g1)
ACCAG529113AG529114
length805841
length of high quality
(start - end)
303 (67 - 369)242 (69 - 310)
definitionCHROMAT_FILE: MSMg01no438_i17.b1 PHD_FILE: MSMg01no438_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:21 2005CHROMAT_FILE: MSMg01no438_i17.g1 PHD_FILE: MSMg01no438_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATGCGCGGAATT
CTACATCTTTATCTGCATGTAGCAGAAGGAGACTGTACCACACTGGGCAT
GGCTTGAGCATAGGAGACCTCAAAGCCCTTCCCTGACCAAGTGACACACT
TCCTCCAGCAAGGCAACACCTACTCCAACAAGGCCACAGCTCCTAATAAT
GTCATTCCCTGTGGACCAAGCATTCAAACACAGGAGTCTATAGGGGTTTT
ACCTATTCAAACCATCATACATGGTTGATGTTATCCCTGGTTCCTATCCA
ATGAATTCCAGTAGTAAACTTCTTTAATATCTCTGGGCATTGTTGTTTGT
TTGTTGGTGGTGGTATTGGTGGTGCCCCAATTCTTAATATCTTATACATT
ACTTATATCTCTCCCCACCCTTTTTTATTTCATTATTTATCTTCCAATTT
AATTTTCTCTCTCGCTCTACTTATATTTACAAATCAAACTTTTGTATACC
TTAATTTTCCCATTTAACTTTTTTCTTTACCACTTTTTACCACCATATAT
TTCTCTTATAATTTCACCTCCACTATTATTACCCACCCTCCCTATATCCA
ACTCTTTTTCAACCAACTTATCAATCTCTATCTTAACCCTTATATTTTCA
CACTTCTTTTTTCTTTTACTATTATTTTAATATTAATAGCTTATTTTTAT
TTTTTTTGTATTATAATGTCTTTTTATTTCTATTTATTCTTTTATTTATT
TTTTAATTTATCTCTTTCTTCTCTACTTTTACTTATCTTTCTTACTTTAT
ATCTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTATCACGCCGTCGCAGCTGACATGCTGGGCC
AACAAGCAGCCCATGTGGAGGGAACAGCTGTGCCTCCCAGTGTTTATGGT
ACTGTCTGCCCGGCTGGCCACTGGCCCCAGATCTCAGAACCAGAGCTCAA
ACAGAATGGGCAGTATGTACTGATATCATGTGCCCGAGTGCATGCATGAT
ATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGTGNTNNNTTTTTTTTTTTTTTNNNNNNNNNNTNNCNNNNNNNNN
NNNNNNNTTTTTTTTTNTTTTCTTTTTTTTCTNTTTTTTTTTTTTTTTTT
TNTTTTTTTTTTTTTTGCCCCCCCCCCTGTTTTTTTCCTCTCCTTTTCCC
TCCTTCCTTTCTCCTTTTCCTCCTCTCTCTTTCTTCTTTTTTTTTCCTTC
TTCGCTCTTTTTTTTCTTTCCTCCCCTTTCTCTTTCTCTCTCCCCTCCTT
TTCTTTTCTTTCCTCTTTTTTTCTCCCTCTTTCTTTTCTTCTCTCCCTTT
TCTCTCTCCTTTTTCTCTCTCTCTTTTTCTCTTCTCCTTTTCCCTTCCTC
TTTTCTTTCTTTCTTTGTCTTTCTCTCCTTTTTTTCCCCCTCTTTCTTTT
CTCCTCCTTCTTTATCTTCTCCTTTTCTCCGTCTCCTCCCCCCCCTTCTC
TTTTTCTTCCCTCTTCTCTTTTCCCCGCCTACCCTTCTTCAGCCACATGC
CCCTCACCCTATTTCCATTTCCTCTTTCTTACTCTATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_i17.g1 MSMg01no438_i17.g1 CHROMAT_FILE:
MSMg01no438_i17.g1 PHD_FILE: MSMg01no438_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:22 2005
         (242 letters)



>mm_chr14_26091722_26092363
          Length = 642

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatcacgccgtcgcagctgacatgctgggccaacaagcagcccatgtggagggaacagc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatcacgccatcgcagctgacatgctgggccaacaagcagcccatgtggagggaacagc 322

                                                                       
Query: 61  tgtgcctcccagtgtttatggtactgtctgcccggctggccactggccccagatctcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgcctcccagtgtttatggtactgtctgcccggctggccactggccccagatctcaga 262

                                                                       
Query: 121 accagagctcaaacagaatgggcagtatgtactgatatcatgtgcccgagtgcatgcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagagctcaaacagaatgggcagtatgtactgatatcatgtgcccgagtgcatgcatg 202

                                                                     
Query: 181 atatagagagagagagagagagagagagagagagagagagagagagagagagagagag 238
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagagagagagagagagagagagagagagagagagagagagagagagagagagagag 144


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)