BAC Information

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BAC

Clone NameMSMg01-438J21
Chromosome14 (Build37)
Map Location 81,511,502 - 81,511,983
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438J21.T7 (MSMg01no438_j21.b1)MSMg01-438J21.TJ (MSMg01no438_j21.g1)
ACCAG529169AG529170
length770755
length of high quality
(start - end)
373 (44 - 416)482 (74 - 555)
definitionCHROMAT_FILE: MSMg01no438_j21.b1 PHD_FILE: MSMg01no438_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:27 2005CHROMAT_FILE: MSMg01no438_j21.g1 PHD_FILE: MSMg01no438_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTGTCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACCTTCATGAGTTCTTTATATATATTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGAACCTTTCCCAATCTGTTGGTGGCCTTTT
TGTCTTATTTACTGTGTCATTTGCCTTGCAGAAGCTTTGCAGTTTCATGA
GGTCCCATTTGTCAATTATCAATCTTACAGCACAAGCCATTGCTCTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCACACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGTTTTTTTGTGGAGTTCCTTGATCC
ACTTAGATTTGACCTTACCACAAGGAGATAGGAATGGATCAATTTGCATT
CTTCTACATGATAACAACCATTTGTGCCAGCACCATTTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAAATCAAGTGAC
CATGGGTGTGTGGGTTCATTTCTGGGTCTTCCATTCCTTTCCATTGTGCT
ACTAATCCTGCCATAATACCCCTAACCAGGCAGTTTTTTAACCCAAATTG
TCCTCGGATTAAAGTTTTTTGCCTATGTTTGGTGGCTTCCCCCATCAATT
GTTTCTTTTCCTTTCTTATAATTTTCTTTCTAACTTCTATTTTTTCTTTT
TTTTTACATACTTATTTTTT
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGAAAGTAATCATTAAGCAGATAAC
ATTGATCTGTTCCTTGACCTCCAGCTCAATGCTATTGAATCCCCTAGATG
ATTACTTGAAAAAGCCTTCTGAGCCACTTAAGCCAGGCATACAACCCCTT
GTGCTTGTTGGAGCCTGCAGGCAGCCTCCTGGTTTAACATAGGCCTCCTG
GTAGTCGCTTCCCATGGCTGGGTGGCTGTCTCTCACCTATGTAGCATAGA
AGGCAGAATTCCTGCTATGTTCTCAAGCTCCAGGAGTGCTGAGTTTAAAA
CAATAGGTTAACTTTCAGTGTTATACCTGGCCTTGCCTTACCACCTGAGG
AAAGTGATCAAACAGATCACCCCCACTGACTCCCCCATTCCAGACAAACT
CCTTACTTTGTGCAAAGGGGAGAATCATTGACCTCAGAAGTGGGTTCAAT
TTGTCATACTTCTCTATGCAATGTCACCCTTTGATCTCTCCACATATTTT
ACTTTTGGACAAAGCTCCTTTGTGTATTCCCTCCATTTTTCCAGAAATTA
CCTGCAGATTGACTTTTAAAGAAAGGATCCAGAATTGTCTACAGTGGATG
GCATACCTCCAGGGAAAAAAATGGGAAAAAGATGTTTTCCTCCTACTAAA
TTAAAAGGTGGGGCAAAACTGGTCCACCACACCTTGTTTTATTGGAATTA
TAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_j21.g1 MSMg01no438_j21.g1 CHROMAT_FILE:
MSMg01no438_j21.g1 PHD_FILE: MSMg01no438_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:27 2005
         (482 letters)



>mm_chr14_81511302_81512183
          Length = 882

 Score =  901 bits (466), Expect = 0.0
 Identities = 478/482 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaaagtaatcattaagcagataacattgatctgttccttgacctccagctcaatgct 60
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 682 catgaaagtaatcattaagcagataacactgatccgttccttgacctccagctcaatgct 623

                                                                       
Query: 61  attgaatcccctagatgattacttgaaaaagccttctgagccacttaagccaggcataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 attgaatcccctagatgattacttgaaaaagccttctgagccacttaagccaggcataca 563

                                                                       
Query: 121 accccttgtgcttgttggagcctgcaggcagcctcctggtttaacataggcctcctggta 180
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acctcgtgtgcttgttggagcctgcaggcagcctcctggtttaacataggcctcctggta 503

                                                                       
Query: 181 gtcgcttcccatggctgggtggctgtctctcacctatgtagcatagaaggcagaattcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtcgcttcccatggctgggtggctgtctctcacctatgtagcatagaaggcagaattcct 443

                                                                       
Query: 241 gctatgttctcaagctccaggagtgctgagtttaaaacaataggttaactttcagtgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gctatgttctcaagctccaggagtgctgagtttaaaacaataggttaactttcagtgtta 383

                                                                       
Query: 301 tacctggccttgccttaccacctgaggaaagtgatcaaacagatcacccccactgactcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tacctggccttgccttaccacctgaggaaagtgatcaaacagatcacccccactgactcc 323

                                                                       
Query: 361 cccattccagacaaactccttactttgtgcaaaggggagaatcattgacctcagaagtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cccattccagacaaactccttactttgtgcaaaggggagaatcattgacctcagaagtgg 263

                                                                       
Query: 421 gttcaatttgtcatacttctctatgcaatgtcaccctttgatctctccacatattttact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gttcaatttgtcatacttctctatgcaatgtcaccctttgatctctccacatattttact 203

             
Query: 481 tt 482
           ||
Sbjct: 202 tt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)