BAC Information

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BAC

Clone NameMSMg01-438K08
Chromosome14 (Build37)
Map Location 94,144,653 - 94,144,784
singlet/doubletsinglet
Overlap genePcdh9
Upstream geneLOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438K08.T7 (MSMg01no438_k08.b1)MSMg01-438K08.TJ (MSMg01no438_k08.g1)
ACCAG529191AG529192
length1,628858
length of high quality
(start - end)
---132 (68 - 199)
definitionCHROMAT_FILE: MSMg01no438_k08.b1 PHD_FILE: MSMg01no438_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:30 2005CHROMAT_FILE: MSMg01no438_k08.g1 PHD_FILE: MSMg01no438_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATGAAGAGAATAGAGAAGATGAGAGTGGNTCGNATATGTAGTTAATCCA
TCTAGCAAGCACTCTCTCAACGACAGTATAGCGTGTGGNTACGAACTAGT
GGTCTCAGACGCATATTATCTCCCCGCACAGATCGATATATGGTGGTCAG
CTNCTTGCAATTGCGCAATGTGAGCTGAGCTATGCGATAGTAGGCGATAC
TTTGTCATACAGTTAAGAAGTACAATATAGTGCGATTATATATGTGANAG
AATAGGCTATCTACGTGTGTAGTGCATGGTTGCTGGCGTGGAGAGTGAGA
TGTATGAGTGTATGATATGATAGGAAGCGCACCGTCACTGCGTGACGAAT
GCTTGGACTGTCTGCGCGGCTGCTCGATCGGCACGTGCAGTATGCGTCTC
TCTCACTTTGATTACACTACCGATGTGACCATGCGGCACGCGATATAATA
TACGTCTANGTGATGAGTGATTATTAGACATGTTAAAACGCTGCATATAG
TGGGAGCGTGCGTTGCCTCCTGTCAGTGTCTGCGCGCGCGATGGCTGGTG
GAGTGGGTGCTCTTGTCGGTGCGAGGTTGCTTGTCTGCTCAGTGCTGCGC
GGTAGNTACGTCAAAGACGTACGCTGTTGTTCTCGCTCTACGCTCGTCTC
AGTACGTGTCNGCGCTCTCGCCGTACAAGTGCTCAACGTGCGTACACGAT
CTCTGCTGCAGCACTGAGGCGACACCACTACGCATCGTTGATAATCGCTT
ATACTGTGCTTCTCGCTATGCCTATCTATCTGCTATATCACTCACACATC
ATATTTGACTCTGTGATAACGACGAGCATGTGACTGATACCTACCACATC
GCACTCGCACGCATGATCCTGCACGATATCGTGCAGTGTCATGTACAGAC
GGCGCGGATCGCATGAGACTTCGTATCGTATAGCGAACAGATGAGAGCCG
CTTAGTACTATAATATATACTAGTAGCGATAAGAATGCGACNCTCGCGCA
CGCTAGACGATGGCTACTGAGTATGACGTGACGCNCTGCGTAGCTGAACG
TCGTCGGATCGAATAGTNCCCGACCCGCAGACGCACATGACTAGCGAGNG
CAGGCAGTGGTGGATGAGTGTATGTGGTGTAAGTGCATGAAGCGATGTCG
AGGAGACTCTCCACGGCTACATATGTATCGACGATGTCGTGTNGCTGTTC
TGTGTTCTGTANATATACGCACTGCTTCGTGTGCTCGCGCGTATGTGTAC
GAGAGATNCACGTCAGTGAGAGACTGATTGCGCGTCGCGGTCACGTCCAC
GAGAGCGTCGCATGTCGATCATGNGATAGNGTGATCAGTTGATATAGTCG
CTATTNCATAGATGTGCTATCATGAAGTCGTACACTCTCGTNTCAGTCTA
TCTCACGTCTGCGCTGTGCATATGTGATAATACATTGGGCAGACGCACGA
GACGTTGGGATATCAATCGATCACCGAGCGTACAANTACTGATCAGAGTC
AAGCACGAAGTAACAGCTAACGTCTCACATCAGCGCTACTCACTCGCATT
ACCTCACCAGCACATATATACTCAACTATGATAGTATAGTCTATACAGAG
ACGTAATGTACTCAAGATTAGAGCGATG
TTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACATCCTATGAGCCTAGAAGGACTGCATTTAT
TCTAACCACCACTGTGACCATCATGTTCTGCTAAATTTTGGAAAAACTAT
GCTATTTGACCCATAAAGTTTCATCATATCATTGAAGTGTTATTATCTGG
GGTAAGTGTGAAGTCTGGTAATTATCCTAGACGCTTTCCCAGACCTATCG
ATTGTTCACGCTGATTACCAGTACCCCTCTTCAATGTTCATTCACGCATT
CCGTCTGCATACTACTTCGTTCCTTTACACGCGTTCCCATTCGCGATCCC
CCGTTTTCCTTTCATTTCTCTCAATCCTATCCCGTTATTTTTTACTCTTT
CCACCTTCTATCCCCCCCCCCCTCTCCCCTTCCTTCCCTTCATTTTCTTC
CTACCATAATATCCTATTCTTTCTCTTCTTTCCACTCCTCCCTTTTTTAT
ATCTTCTCTTTATCCATATATATCCTACCTCCCTTCACTACTTTTATCTA
TATATTTATCCTTTTATTTCTCCCTCTACCTCTTTTTCTTTCTTCATTCC
TTTCTCTTTTCCTTATCCATATTTCCCTCTCCTTTTTATTTTTTCTTTCT
CTCTCTTCTCCTACCTTCACTTCCTTTCCCTTCCATCACTTTACATACTA
TATATTGCTTTATTACCTTTTCTATATCCTTTCAACATCTACCCATGTTC
TACCTTCCCATTCCTTATCTCTTATATTATTCCCCTTCTCTTCCTCCTCC
TCCTTTTCTTCTATTCCCTCGTTCCTCACCTCCCCCTCCGTTTCTCTTTT
CCTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_k08.g1 MSMg01no438_k08.g1 CHROMAT_FILE:
MSMg01no438_k08.g1 PHD_FILE: MSMg01no438_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:30 2005
         (132 letters)



>mm_chr14_94144453_94144984
          Length = 532

 Score =  255 bits (132), Expect = 6e-73
 Identities = 132/132 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatcctatgagcctagaaggactgcatttattctaaccaccactgtgaccatcatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cacatcctatgagcctagaaggactgcatttattctaaccaccactgtgaccatcatgtt 273

                                                                       
Query: 61  ctgctaaattttggaaaaactatgctatttgacccataaagtttcatcatatcattgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ctgctaaattttggaaaaactatgctatttgacccataaagtttcatcatatcattgaag 213

                       
Query: 121 tgttattatctg 132
           ||||||||||||
Sbjct: 212 tgttattatctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space:    64976
Effective search space used:    64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)