BAC Information

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BAC

Clone NameMSMg01-438K17
Chromosome14 (Build37)
Map Location 37,502,383 - 37,502,726
singlet/doubletsinglet
Overlap genenone
Upstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
Downstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438K17.T7 (MSMg01no438_k17.b1)MSMg01-438K17.TJ (MSMg01no438_k17.g1)
ACCAG529209AG529210
length746759
length of high quality
(start - end)
599 (44 - 642)345 (71 - 415)
definitionCHROMAT_FILE: MSMg01no438_k17.b1 PHD_FILE: MSMg01no438_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:32 2005CHROMAT_FILE: MSMg01no438_k17.g1 PHD_FILE: MSMg01no438_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCATGAG
GTCCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTGGTGTTCTAT
TCAGGAATTTTTCCCCTGTGTCCATATCTTCAAGGCTTTTCCCCACTTTC
TCCTCTATAGTGTCTCTGGTTTTATGTGAAGTTCCTTTATCCACTTAGAT
TTGACCTTAGTACAAGGAGATAGGAATGGATCGATTCGCATTCTTCTGCA
TGTTAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTCT
TCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTG
TGTGGGTTCATTTCTGAGTCTTCAATTCTATTCCATTGGTCTACTTGTCT
GTCATTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAA
GCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTTTTTTTTATCCTTGA
GAAGAGTTTTTGCTATCCTAGGTTTTTTTGTTAATCCAGATGATTT
TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCCTCTGGCTGCAAAGGGCTGTAAAACAG
CGAAACACTGTGTAACACAGGCTTTTGCTTTGTTTGCAGTTTAAATCTAT
ACCTACTCTCTGACCCAGTCACTCTATCACCATCTCTTCTTGTCCAAGTA
CAGCAAAAACACTGCATATGCATATCCATGATGAAGAGGAACTCAGTAGT
ACTCTCTGTTCTGTATCTTGAACAGTTCAGCAAAATGCTGTCGATCTGAG
CAAGAAAAACAGACAGGATAATATATATTGCCCTACTCAGTTAACATGAA
TGTCCAGAGCAGGCAAATTTTAGCGTGGATGAAGAAGGGAAAATTGAGCA
AATAGCTGCCTCCACCCACTTCAAACAGGTATTATCTGGGGAAATATTAA
GCAACTTTTTATAACAGTGGTTCTCAACCTATAGGTCATGACCCCTTTGA
GAGCAAATGATCATTTCACAGGTGTCACCTAAGACCATCAGAAAATACAG
ATATTTACATTATTACTAGCTATAGCAGTAGCAAAATTACAGTTACAAAG
TTGCAATGAAAATAATTTTATAGCCGTATGTCAGCAAACATGAGGAACTC
TCTCGAAGAATCGTCATATTTGGACCGTTGATATTCACTGCTTCGTCGAT
TTCATCATTATCATCTCTGCATTTCACCTTGTTTTTACTTACTCCTTTTA
CATTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_k17.g1 MSMg01no438_k17.g1 CHROMAT_FILE:
MSMg01no438_k17.g1 PHD_FILE: MSMg01no438_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:32 2005
         (345 letters)



>mm_chr14_37502183_37502927
          Length = 745

 Score =  658 bits (340), Expect = 0.0
 Identities = 343/344 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctctggctgcaaagggctgtaaaacagcgaaacactgtgtaacacaggcttttgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctctggctgcaaagggctgtaaaacagcgaaacactgtgtaacacaggcttttgctt 260

                                                                       
Query: 61  tgtttgcagtttaaatctatacctactctctgacccagtcactctatcaccatctcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttgcagtttaaatctatacctactctctgacccagtcactctatcaccatctcttct 320

                                                                       
Query: 121 tgtccaagtacagcaaaaacactgcatatgcatatccatgatgaagaggaactcagtagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtccaagtacagcaaaaacactgcatatgcatatccatgatgaagaggaactcagtagt 380

                                                                       
Query: 181 actctctgttctgtatcttgaacagttcagcaaaatgctgtcgatctgagcaagaaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actctctgttctgtatcttgaacagttcagcaaaatgctgtcgatctgagcaagaaaaac 440

                                                                       
Query: 241 agacaggataatatatattgccctactcagttaacatgaatgtccagagcaggcaaattt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacaggagaatatatattgccctactcagttaacatgaatgtccagagcaggcaaattt 500

                                                       
Query: 301 tagcgtggatgaagaagggaaaattgagcaaatagctgcctcca 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcgtggatgaagaagggaaaattgagcaaatagctgcctcca 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)