BAC Information

Click to search

BAC

Clone NameMSMg01-439K08
Chromosome14 (Build37)
Map Location 33,692,809 - 33,693,057
singlet/doubletsinglet
Overlap geneE130203B14Rik
Upstream geneGalntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik
Downstream geneEG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439K08.T7 (MSMg01no439_k08.b1)MSMg01-439K08.TJ (MSMg01no439_k08.g1)
ACCAG529950AG529951
length753717
length of high quality
(start - end)
249 (66 - 314)229 (81 - 309)
definitionCHROMAT_FILE: MSMg01no439_k08.b1 PHD_FILE: MSMg01no439_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:49 2005CHROMAT_FILE: MSMg01no439_k08.g1 PHD_FILE: MSMg01no439_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAATCCGCGGAAT
TCTTTGTTATGCCCTTGAGGGCACTGGCTTTGTTGTCTGGGCCACTGCCT
CCTTGAGAAGACACACAGGGCCTGTCTACTAGTGCCAGGCCCCAAGACAA
TGACGAATCAGCCAGCAGTCAGGAGATGACTGGGGTGCTCAGAGTGGGGA
GAGATTTCTGGACAAATGGATCCTTTTAAAATTTGGACCCCGTTTGCCTT
TATAACCGGAGTTAACATTCTTCTGTGCAGATTTCCTCTGATGACAAGTG
TTCCTCGAATTTTGGAATCTTTGTGGACACACCGTTGTGACAGGCTCACT
CCTGGGCACTGTTACGCTGCTCTCCTTAGTGTGCACCAAGGAGGCACTGT
CTAGATTTTTCTCGAGTTCTAAATCCTGCCCTGGGCTGGACAGGAGGTCA
AGGTTGAAGGCTCCCAAGATCTCAAGAGCTCCTCCCTGTTGGGTCCTGTG
AGCTGTACCCTCTGTCCCTTCTAATAGGAAGGCCCCCTACTCAGGTTAAT
TCTCCCCTAGGAGCTTATGCGCACTGTCCTATATCCTCTTTCTTGTCTAG
GACCACTTTTTTTGTTCCGTCTTGCCCGCCTTTATGCGTTTCCATTCTCT
GCCCAACCGTGTTATTACGTTAGTTTTTATCTTTAGATTTTACCCTGCCC
CTGCCTCTTGTCCTGGTTTTTATCTTTCCTCTTGTTCCTTCCCTCCCCTT
TTT
CGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCAAAATACCTTGATGNGACATGCTACCGGGCCCTCATG
TGTCCAGTCCTATGGCCATTACACCAGACACTGGTCCTGCTTATTAAAAG
AAAGGAACTAAGACTCAGAATCATCAAGTGACCTGCCCCAGGGCACACAG
GGCACAGTCAAAGTCAAATGTAGATGATTCTGATAGCTAAAGGTATTCTC
AAACTTCCACTGTAATCTGCTGTCTCTCAACCTCCTTTGTGTTAGCTGCG
CTAGAATAGTGTTAATCGTTTCCTGAAGGCGTCACAATGCTGGCTCTCAT
TGATTTTCACATGCGGAAAGCATTCTGGAATCCATGTATTCCCAGACTAA
TAGCCCTGCCCAGCCCTTTGCAACACAATATTAACGTCATACTCCACTCC
AAGAAGGCGATTCCTCACTAGTATCCTTTGCGTAACTACGATCCAAGTGC
GTCAGTGTCCCCTGTTCCTCAGTATCATCCTTCTCATAATTTACTTTTGA
CAACACTTTGCTTTTTTTTTCACATATGTGTTCTTATTCGCCCATTATTC
TCTATCCCGCTTTTCACTACTTGGATCCCTCATCCTATACTGTCCTCCTT
CCCTTGCCCTCTATATTCCTTCCTTTTTCCTTCCACCCTCCTTGTCCTCT
TCTCATTTTCTCACTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_k08.b1 MSMg01no439_k08.b1 CHROMAT_FILE:
MSMg01no439_k08.b1 PHD_FILE: MSMg01no439_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:49 2005
         (249 letters)



>mm_chr14_33692609_33693257
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagggcactggctttgttgtctgggccactgcctccttgagaagacacacagggcctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagggcactggctttgttgtctgggccactgcctccttgagaagacacacagggcctgt 260

                                                                       
Query: 61  ctactagtgccaggccccaagacaatgacgaatcagccagcagtcaggagatgactgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctactagtgccaggccccaagacaatgacgaatcagccagcagtcaggagatgactgggg 320

                                                                       
Query: 121 tgctcagagtggggagagatttctggacaaatggatccttttaaaatttggaccccgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctcagagtggggagagatttctggacaaatggatccttttaaaatttggaccccgttt 380

                                                                       
Query: 181 gcctttataaccggagttaacattcttctgtgcagatttcctctgatgacaagtgttcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctttataaccggagttaacattcttctgtgcagatttcctctgatgacaagtgttcct 440

                    
Query: 241 cgaattttg 249
           |||||||||
Sbjct: 441 cgaattttg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)