BAC Information

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BAC

Clone NameMSMg01-439P04
Chromosome14 (Build37)
Map Location 10,883,053 - 10,883,494
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100041948, LOC100042415
Downstream geneLOC100041974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439P04.T7 (MSMg01no439_p04.b1)MSMg01-439P04.TJ (MSMg01no439_p04.g1)
ACCAG530180AG530181
length762739
length of high quality
(start - end)
373 (43 - 415)451 (80 - 530)
definitionCHROMAT_FILE: MSMg01no439_p04.b1 PHD_FILE: MSMg01no439_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:12 2005CHROMAT_FILE: MSMg01no439_p04.g1 PHD_FILE: MSMg01no439_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCTCGGTTTAGCTTTATCCCCCATTTTTTGATAGGGTTGTTTGGCTT
TTTTGATTATTAACTTCTTGAGTTCTTTATGTATTTTGCAGATTAGCTCT
GCATTGGTTGTGGGGTTAGTTAAGATTTTTTTTCCCAATCCGTAGGTTGA
CAATTTGTCTTATTGAGTATGTCCTTTGCCACATACAAAAGTTCAATTAA
GAGCAGGTAAACTATCTAAACAGGCCCATATCACACAAGGAAACAGAAGA
AGTCATTAAAAACCTCCCTTTCAAAAAAAGGCCCAGAGCCAGATGGATTT
TGTCCAGAATTCTACCAGACCTTCAAAGAGGACCTGATACCAATTGTCCT
AAAACTATTCCATAACATATAATCCGAATGAATACTACCTAACTGGTTCT
ATGAAGCCACAATTACTCTAATACCTAAACCCCACATTGGATCCAATCAA
TCAAAGATAACTTCAGACCCATCTTTGCTTCATGACTATTGGTACTAAAA
TATCTCATTACCTCCCCTGCAACTTGAATCCCAGATTTTTATCAAACCTT
TCTCTCGTGTCGCATCTAGTTTATGTTTCCCCTCCAGATATACCCCCCCC
GTTCCCCCCACTTTAAACAATCCCCCCCCTGCTTTTCCCTCCCCCCCGCC
CCCCCTTTTTTTTGTACCACCCCCTCTTTGCTTTTTCTCTGCTCCCCCTC
GCCCAACAAAAC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTTGGGATACATAACAAGAT
TCTGTCCCCAAATGCCAGACAGAAAGTGGTAAAGCCTAGATAGTCAAGAA
GAAAATTATTTCTGATTTTCTTATCCATGGTGCTTATAAAACTATGTGTT
CTAGTCTTCCCAGTTTGGAGTCAAGCTCTGATCATCTGGTCATTTCTGCC
CTGCTCCCATATACCTATTCTGCTGTGTCTGGGTAGTAAGTATACTTTGA
GTAGCAAGAATGAAAATCATGTCTAGGTGCCAACATTAAACACAGTTGTT
CTCAAGCTAGACTCTTGTTTCTACCAGGGCCTCCCTACAGGACCTGAGGT
CACTTTGGGGTTGCTTCTGCCAGGTGCTATAGAAAGATGTGTGGAATTGT
GCTTGACTGAAAGGGTTTTGCAGAGAAATGCGCTGTGTTCCTTTTCTTTA
CAACCTTTTTTAGTTACCTGTCTGCTTTCCAGTATTTTCCCCCTGGCCTT
AAAGACAGCTTTTCTGCTCTCCAAGGAGTGTAATACATCTTATACGCTCT
ATAATCACTTGAGTAATTCCCCAGTTGGTACTCAGTGGTCAAGTATTTAA
AGCCCAATGCCCCCCTACCCCTTATTCCTCCTTTTGGTTCCCCCCCCCCC
ACTTTTTCTCACCGTTTTTTTTTTTCTCCTCTGTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_p04.g1 MSMg01no439_p04.g1 CHROMAT_FILE:
MSMg01no439_p04.g1 PHD_FILE: MSMg01no439_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:12 2005
         (451 letters)



>mm_chr14_10882853_10883695
          Length = 843

 Score =  785 bits (406), Expect = 0.0
 Identities = 437/450 (97%), Gaps = 8/450 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttgggatacataacaagattctgtccccaaatgccagacagaaagtggtaaagcctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gtttgggatacataacaagattctgtccccaaatgccagacagaaagtggtaaagcctag 583

                                                                       
Query: 61  atagtcaagaagaaaattatttctgattttcttatccatggtgcttataaaactatgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 atagtcaagaagaaaattatttctgattttcttatccatggtgcttataaaactatgtgt 523

                                                                       
Query: 121 tctagtcttcccagtttggagtcaagctctgatcatctggtcatttctgccctgctccca 180
           ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 522 tctagtctt-ccagtttggagtcaagctctgatgatctggtcatttctgccctgctccca 464

                                                                       
Query: 181 tatacctattctgctgtgtctgggtagtaagtatactttgagtagcaagaatgaaaatca 240
           |||| ||||||||||||||||||||    |||||||||||||||||||||||||||||||
Sbjct: 463 tataactattctgctgtgtctgggt----agtatactttgagtagcaagaatgaaaatca 408

                                                                       
Query: 241 tgtctaggtgccaacattaaacacagttgttctcaagctagactcttgtttctaccaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||
Sbjct: 407 tgtctaggtgccaacattaaacacagttgttctcaagctagactc-tgtttc--ccaggg 351

                                                                       
Query: 301 cctccctacaggacctgaggtcactttggggttgcttctgccaggtgctatagaaagatg 360
           |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 350 cctcccaacaggacctgaggtcactttggggttgcttctgccagatgctatagaaagatg 291

                                                                       
Query: 361 tgtggaattgtgcttgactgaaagggttttgcagagaaatgcgctgtgttccttttcttt 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 290 tgtggaattgtgcttgactgaaagggttttgcagaggaatgcgctgtgttccttttcttt 231

                                         
Query: 421 acaaccttttttagttacctgtctgctttc 450
           ||||||||||||||||||||||||||||||
Sbjct: 230 acaaccttttttagttacctgtctgctttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 843
Length adjustment: 10
Effective length of query: 441
Effective length of database: 833
Effective search space:   367353
Effective search space used:   367353
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)