BAC Information

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BAC

Clone NameMSMg01-440D12
Chromosome14 (Build37)
Map Location 124,574,717 - 124,575,271
singlet/doubletsinglet
Overlap geneFgf14
Upstream geneVgcnl1, Itgbl1, LOC668700
Downstream geneGA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440D12.T7 (MSMg01no440_d12.b1)MSMg01-440D12.TJ (MSMg01no440_d12.g1)
ACCAG530387AG530388
length1,807740
length of high quality
(start - end)
---555 (80 - 634)
definitionCHROMAT_FILE: MSMg01no440_d12.b1 PHD_FILE: MSMg01no440_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:35 2005CHROMAT_FILE: MSMg01no440_d12.g1 PHD_FILE: MSMg01no440_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAACCCGACACCATAGTTGATGATCNTNTTTCNTCTCTGCTCTTATCTCT
CGTGCTACANNANCACCTATTCTANATACNNAGNTCATAGTNAGATGTGT
GAATNCTGGTGTCATACACTTACCCCAGACTCNTCCNTCGGTCTCGCTCT
ACTCTTCTCGCGCGCTACTAACTCACCCGGATANCTACCATGTCCTCTAT
GACACTGTAGCGCACACGTAGATCATCAGATAGACCAGAAGTAGAGCGAT
ATAACTACANATAATATAGCACTGATCAGAGTATATGTAGAAGGGATGTG
TACAGTGTGCATGTGCGACATATGAGATGCGTGGCCTATATGACGCTTAG
TCAATATCNAACTGATGACAGCATCAGCTACTGCAAGTAANGACCTGCAC
ACGTGCATGATCACTANATCTGTGATGGTAGTTGTGTGTATGGAGTGGTG
GGCGGAGTGCAGCGGCTAGCGCAGACAGTGGGTGCGCGGTGATGCGCGCT
GTCGACGTGAGTGCTGATGATGCGCGCAGAGATGTGGGTGTGGAGGGAGG
CAGGTGTGTGCGCGAGTGAGTGGGTGCGCGNCAGGAGAGAGATATACTAG
AGTTGACAGATGTATGATGGATATCATGGTACTGCATGACTGTGAGTATG
TGAGNTGCCGAGTGAGTGCAGTGTGTGCATCNCGATCTAGCTCATACACG
TCNATCTAGTGGATAATGACAGTGCTGCCGATTCAGACGCGTCGCAGAGC
TGACGATAAAGTCGAGTGTGCGTGTNACGAGACACTGATGTCGTGTGATG
AGCACGNATCTAGCGCGTCGTGTGAGGCTGCAAGCTTGCTGCCGATCAAC
TGATGCATCTCGACACAGCATGCACTANCATACTCTCACTAGTACCGCTA
CNACTCTATGACGATGTCNCTGCATCACAGAGCTGCCTAGTGCTGCTCGG
CGTCCTCGCTCATACACTATGATCGACGANTAACGTGACAGTCCATACTG
CTAACGTGCGCTGATCACGCATGTCCTGCTTGCGAACTNGCACATCACGA
ATGACTCTCGCGAACGATAGCTATGTATGTGACGTGACGNTCGCATCGCC
GTCACAGTTAATCATCAACTATCTANCGATGTATGAGCATTNATCANCAG
TATATACTAGCGATAGTATTGATGATACGACGTATNGCGCAGNCATCNNG
CGTGTGCATCTGNCTTATCATACGACATATANAGCTCGTATAGATCCGAT
TGTACACAAACTATGCACTATACACTATCCAGCCANCACTCGACATTNCG
CGCTCATCTCTCGTGTAGAGGCTGAAGCGTATACTCGNTCCATACGAGTG
ACGTNATGCACAGTACTAGACAGACTATGAGCANCGACTGAGAGCACAGC
TAGTACGAATCTGGANACANGCTAGTGTAGGTGGTCGTCGATCATCGTCG
AGTCGTATTGCTTCCTGNACGATGATGNCTGCACGCGNGTGAGTCTACAT
ACGACGACTGACGACGTGATCATGAGTATGGCACATCATACGACCGACGA
GAGCGATANTCNCGANTACGCGATATCTCCTCGCANTACTCNATTGTTAC
TCATGATGATGCTNCAGCCATCNATCGANTAATAAGTAGNATNGAACAAC
AGCGTACGCTACTCTTACTGATACTGAAGTCACCGNCTCATGTNATCGCA
GCGANTATCGAATAGAACGTAGCATCGTACGTCGTAGACGAGACCCNACG
ATCACGACGAGTNCCGTTATATCTCTATACGATCTNGCAATCTGCATTGC
ATCGTGN
NNNNNACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCTATGGAGCTTTTATTAA
ATGTGATGCTTTTGAAGGGAGACCAGATTAATGTAATTCTGATTAGCAAT
CAGCAACTGAAGACTTCAGATTCTCAAAGCCATGACAGGCTTGGAAAGCA
TCCTTGGGTAAAAGTATCAGTAAATGGTAATTTCTCTAGAGAAGAAAATA
ATTATGATTCAAGAGGAGTATTTATGGATCTAGGGAATTCTGTATTGGCA
CTTGCATCCAAGGTGATTCCATTTATTTTGTTTGATATACCCATGCTTGT
TAAAGGTACTGAGTAACTGGCTGTAGCAGTACTGGGTGCAAGAATATTGT
TTCATGAGGAAATAAATGGGTGGACTACACATTACATATCCTGACATGAT
ATTTAGAAAGAAATTTGAGTTATTTATTTATTGTTCTTGAAAGATATAGG
ATCCCCTCTAGGTACAAAAATTAAATAAAATTGTAAATTGCTTTATTAGC
CAGTCTTTTGTTTCTCTTTCACATTGTTGTGCTGTATATTGAAGAAGATG
GGTATTCCACCTAATTCCATTTTATAAATATTGGGCCAGTTTCTAGATTA
ATAACTGCTTAAAGTTTCTTATTATTGAAATACAATGTCCTACTCACAAG
AAAAGAGCTAACTATGTTTTAACCGTGAAAGCATTTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_d12.g1 MSMg01no440_d12.g1 CHROMAT_FILE:
MSMg01no440_d12.g1 PHD_FILE: MSMg01no440_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:35 2005
         (555 letters)



>mm_chr14_124574517_124575472
          Length = 956

 Score = 1011 bits (523), Expect = 0.0
 Identities = 547/555 (98%), Gaps = 1/555 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatctatggagcttttattaaatgtgatgcttttgaagggagaccagattaatgtaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aatctatggagcttttattaaatgtgatgcttttgaagggagaccagattaatgtaattc 696

                                                                       
Query: 61  tgattagcaatcagcaactgaagacttcagattctcaaagccatgacaggcttggaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tgattagcaatcagcaactgaagacttcagattctcaaagccatgacaggcttggaaagc 636

                                                                       
Query: 121 atccttgggtaaaagtatcagtaaatggtaatttctctagagaagaaaataattatgatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atccttgggtaaaagtatcagtaaatggtaatttctctagagaagaaaataattatgatt 576

                                                                       
Query: 181 caagaggagtatttatggatctagggaattctgtattggcacttgcatccaaggtgattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 caagaggagtatttatggatctagggaattctgtattggcacttgcatccaaggtgattc 516

                                                                       
Query: 241 catttattttgtttgatatacccatgcttgttaaaggtactgagtaactggctgtagcag 300
           ||||||   ||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 catttagagtgcatgatatacccatgcttgttaaaggtactgagtaactggctgtagcag 456

                                                                       
Query: 301 tactgggtgcaagaatattgtttcatgaggaaataaatgggtggactacacattacatat 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tactaggtgcaagaatattgtttcatgaggaaataaatgggtggactacacattacatat 396

                                                                       
Query: 361 cctgacatgatatttagaaagaaatttgagttatttatttattgttcttgaaagatatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cctgacatgatatttagaaagaaatttgagttatttatttattgttcttgaaagatatag 336

                                                                       
Query: 421 gatcccctctaggtac-aaaaattaaataaaattgtaaattgctttattagccagtcttt 479
           |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 335 gatcccctctaggtacaaaaaataaaataaaattgtaaattgctttattagccagtcttt 276

                                                                       
Query: 480 tgtttctctttcacattgttgtgctgtatattgaagaagatgggtattccacctaattcc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgtttctctttcacattgttgtgctgtatattgaagaagatgggtattccacctaattcc 216

                          
Query: 540 attttataaatattg 554
           |||||||||||||||
Sbjct: 215 attttataaatattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 956
Length adjustment: 10
Effective length of query: 545
Effective length of database: 946
Effective search space:   515570
Effective search space used:   515570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)