Query= MSMg01no441_c03.b1 MSMg01no441_c03.b1 CHROMAT_FILE:
MSMg01no441_c03.b1 PHD_FILE: MSMg01no441_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:48 2005
(505 letters)
>mm_chr14_66293933_66294840
Length = 908
Score = 777 bits (402), Expect = 0.0
Identities = 487/522 (93%), Gaps = 23/522 (4%)
Strand = Plus / Plus
Query: 1 acagtgtgtctaggagaagtgagagaggtctgagggtcgaagcctcgtgctgcatgctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 193 acagtgtgtctaggagaagtgagagaggtctgagggtcgaagcctcgtgctgcttgctgg 252
Query: 61 gctagagggtccattgccaggaagtgtcctcggtggacaggaagggcctcctccaccata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gctagagggtccattgccaggaagtgtcctcggtggacaggaagggcctcctccaccata 312
Query: 121 tctcctgcaactaccttgcagcttctactactcacaactgt-tgccc---c-ct-tctgt 174
||||||||||| ||||||||| ||||||||||||| || | || || | || ||| |
Sbjct: 313 tctcctgcaaccaccttgcagtttctactactcac--ct-tctgtccagtctctctctct 369
Query: 175 c-caatctatttctcat-------tctctctctctctctctgcttgctcctagcttttgc 226
| | ||| | |||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctc--tctctctctc-tctctctctctctctctctctctctgcttgctcctagcttttgc 426
Query: 227 catcttctctcctttcccatgcctccactcctcta-ttctttttt-cccaggtgataagg 284
| |||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct: 427 cgtcttctctcctttcccatgcttccactcctctaattctttttttcccaggtgataagg 486
Query: 285 aaaggggagggacttggtccatcattggtcccctgcatgcagcatcctcccatccttcca 344
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aaagggaagggacttggtccatcattggtcccctgcatgcagcatcctcccatccttcca 546
Query: 345 gctgcccgcctccactatagcctctgtagctcaggttctctgtac-ctctgaggctgctt 403
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 547 gctgcccgccttcactatagcctctgtagctcaggttctctgtactctctgaggctgctt 606
Query: 404 cctgctttctgtgtcctatcgctcagcagtctccctggagcccactgtagactgtaaggc 463
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 607 cctgctttctgtgtcctatcgcgcagcagtctccctggagcccactgtagactgtaaggc 666
Query: 464 taagggcagagctaccacctgctaggcagtagcacaggggat 505
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 taagggcagagctaccacctgctaggcagtagcacaggggat 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 908
Length adjustment: 10
Effective length of query: 495
Effective length of database: 898
Effective search space: 444510
Effective search space used: 444510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_c03.g1 MSMg01no441_c03.g1 CHROMAT_FILE:
MSMg01no441_c03.g1 PHD_FILE: MSMg01no441_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:48 2005
(459 letters)
>mm_chr14_66446636_66447495
Length = 860
Score = 812 bits (420), Expect = 0.0
Identities = 450/460 (97%), Gaps = 1/460 (0%)
Strand = Plus / Minus
Query: 1 tttttgctttaatgtcctagttttatttattttataggtgtctttttctctcatataatg 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 660 tttttgctttaatgtcctagttttatttattttataggtttctttttctctcatataatg 601
Query: 61 ctacatcactttttttttt-ctttaccattaaggggaaataataatactgagaatagaag 119
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ctatatcacttttttttttcctttaccattaaggggaaataataatactgagaatagaag 541
Query: 120 atgagatcagttttttttttttattacagatggaatagatttttgtgaacttgagtaaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 atgagatcagttttttttttttattacagatggaatagatttttgtgaacttgagtaaaa 481
Query: 180 taattgttacattattatacagtacctagcttgtagtaattagtttattatttcacttaa 239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 480 taattgttacattattatacagtatctagcttgtagtaattagtttattatttcacttaa 421
Query: 240 agatttttagacaatctagaaggtaaacacaattagaattgttataactgtaatcatctc 299
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agatcctcagacaatctagaaggtaaacacaattagaattgttataactgtaatcatctc 361
Query: 300 atctgaggaaacagaaatttagccaccattgcacaggtcctcagtgctgaggccaagaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atctgaggaaacagaaatttagccaccattgcacaggtcctcagtgctgaggccaagaat 301
Query: 360 agaattcacgtttgaatcaaaagcccattgggttatatttcctctcctacatgatactag 419
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 300 agaattcacgtttgaatcaaaagcccattgggttatatttcctcccctacatgacactag 241
Query: 420 gttaacaataactaaattttaacgaacatttataatcatg 459
||||||||||||||||||||||| ||||||||||||||||
Sbjct: 240 gttaacaataactaaattttaacaaacatttataatcatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 860
Length adjustment: 10
Effective length of query: 449
Effective length of database: 850
Effective search space: 381650
Effective search space used: 381650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
