BAC Information

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BAC

Clone NameMSMg01-441G10
Chromosome14 (Build37)
Map Location 84,325,163 - 84,325,720
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
Downstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441G10.T7 (MSMg01no441_g10.b1)MSMg01-441G10.TJ (MSMg01no441_g10.g1)
ACCAG531291AG531292
length748747
length of high quality
(start - end)
588 (45 - 632)558 (77 - 634)
definitionCHROMAT_FILE: MSMg01no441_g10.b1 PHD_FILE: MSMg01no441_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:10 2005CHROMAT_FILE: MSMg01no441_g10.g1 PHD_FILE: MSMg01no441_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGAGGATCCGCG
GAATTCTGTTGTACTTTTGATAGTAATTGTATTGTATCTGTAGATTGCTT
TTGATAAAAATACCATTTTTACTATGCTAAACCTACCAATCATGAGCATG
AGAAACATTTCTACCTACTGATATCTTTCTCAATTTCATTCTTCAGAGAC
TTAAAACATTATTCCGAGACATAATAGTCTCATCATATAAGACTTTCACT
TGCTTGGTTAGAGCTACTGCAATATATTTTATATTATATGTGGCTATTTT
GAAGGGTGCTGTTTCTGTTATTTCTTTCTCAGCTTTTTCATTTTTATAAA
GAGGGTTATTGATTATTTTTTTAGTGAATTTTGTATCAATCCACTTTCCC
AAAGGTGCCTATAGGCTGTAAAGATTATTTTCTAGATTTTTTTTGGGGGG
TCACTTACGTATGTACTATCATAACTCTGCAACTAGCAATACGTTGACTT
CTTCTTTTCTAATTTGTATAAACAAATTATGGCCATTAGGTGCCTTATTG
CTCTACCTAGATCTTGAAATACTATGAAAAGATAGAATGGACAAGCTAGT
TATATCCCTGATTTTAGTGGAATTGCTTTAAGNTTCTTATCATTTCTTCA
TTTAATTTGATGTTGGCTAGNTGCTTGCATATTGCATTAAATGTTTTTAC
ATATGAAGCTTATATCTTTAATATCCCCCAGTGTTTTATAACGAAGGG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGGATATATATGAATTTATAA
ATCCTAAGAATGACTTAAACAATTTGCAGTTTCATGACACCTATTATTAA
ACAGTTTTGTGACACCCATTTTAAAAACATATTACTCAAAGTTTGTGTTC
ACAAGGTACAAGTTTGAAACAACAAAAGAGATGTATACATAGTTATATTA
AATGTATTAATGTCACAAAGGTAGTCATATTTCCAAATCATGGATGCAAT
CCTGCATCACAGAGAATATTTTTTTAGACTGATTCCATAAAATTCCATGT
ATTTAAGGGCTATTGTACTATTGACAGGAGGTAGAATCTTTCTCTTCAAC
AGAGTAATGAAATTCTAGCCTTTTCTTTCTTTTATTCCTTGTAGTCTTAG
ATTGAAAGTGCTCAGTTGATAATGATATATCCAAACCCTGATAAATCTAC
CACAGGCTGAATAAAACATGACCAACAGCCTGTGGACTGAAACATCTGCA
GGCTCAAGCCACAATAAATGCATTATTATTTTTAAGTTCATTAGCGCCAA
ATGGTGGTCTGGGAGAGACTCTAGCTATATTTTCATTATCAGAATCATGC
ATTTTTCTTTATTTTAAAATATATGTTATAAGTAGAAGTGAATATTCACT
CTGCATTTTAAGGNATTGTAAATGTCCCTTCTTTTCTAAATTTGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_g10.g1 MSMg01no441_g10.g1 CHROMAT_FILE:
MSMg01no441_g10.g1 PHD_FILE: MSMg01no441_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:10 2005
         (558 letters)



>mm_chr14_84324963_84325920
          Length = 958

 Score = 1011 bits (523), Expect = 0.0
 Identities = 550/559 (98%), Gaps = 2/559 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaggatatatatgaatttataaatcctaagaatgacttaaacaatttgcagtttcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tttaggatatatatgaatttataaatcctaagaatgacttaaacaatttgcagtttcatg 699

                                                                       
Query: 61  acacctattattaaacagttttgtgacacccattttaaaaacatattactcaaagtttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 acacctattattaaacagttttgtgacacccattttaaaaacatattactcaaagtttgt 639

                                                                       
Query: 121 gttcacaaggtacaagtttgaaacaacaaaagagatgtatacatagttatattaaatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gttcacaaggtacaagtttgaaacaacaaaagagatgtatacatagttatattaaatgta 579

                                                                       
Query: 181 ttaatgtcacaaaggtagtcatatttccaaatcatggatgcaatcctgcatcacagagaa 240
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 578 ttaatgtcacaaaggtagtcatatttccaaatcatggatgcaatgctggatcacagagaa 519

                                                                       
Query: 241 tatttttttagactgattccataaaattccatgtatttaagggctattgtactattgaca 300
           ||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tattgctgtagactgattccataaaattccatgtatttaagggctattgtactattgaca 459

                                                                       
Query: 301 ggaggtagaatctttctcttcaacagagtaatgaaattctagccttttctttcttttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggaggtagaatctttctcttcaacagagtaatgaaattctagccttttctttcttttatt 399

                                                                       
Query: 361 ccttgtagtcttagattgaaagtgctcagttgataatgatatatccaaaccctgataaat 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 398 ccttgtagtcttagattgaaagtgctcagttgataattatatatccaaaccctgataaat 339

                                                                       
Query: 421 ctaccacaggctgaataaaacatgaccaacagcctgtggactgaaacatctgcaggctca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctaccacaggctgaataaaacatgaccaacagcctgtggactgaaacatctgcaggctca 279

                                                                       
Query: 481 agccacaataaatgcattattatttttaagttcattagcgccaaatggtgg-tctgggag 539
           |||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct: 278 agccacaataaatgcattattatttttaagttcattagtgccaaatggtgggt-tgggag 220

                              
Query: 540 agactctagctatattttc 558
           |||||||||||||||||||
Sbjct: 219 agactctagctatattttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)