BAC Information

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BAC

Clone NameMSMg01-442L13
Chromosome14 (Build37)
Map Location 93,558,346 - 93,558,712
singlet/doubletsinglet
Overlap genePcdh9
Upstream geneLOC638252
Downstream geneLOC668566, LOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442L13.T7 (MSMg01no442_l13.b1)MSMg01-442L13.TJ (MSMg01no442_l13.g1)
ACCAG532299AG532300
length754734
length of high quality
(start - end)
371 (77 - 447)437 (85 - 521)
definitionCHROMAT_FILE: MSMg01no442_l13.b1 PHD_FILE: MSMg01no442_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:01 2005CHROMAT_FILE: MSMg01no442_l13.g1 PHD_FILE: MSMg01no442_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCCTTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAAGAAGTTCGCCATTAATATGGGTAAATGACTTTA
CATATCATGTGTTAAATTATTACCAGTTACATTTCTGAAAGCATTAGCAC
GTTATTATGAACACAGTGTGGCTTATAAGCATCATGCTAGGTGCAAGTCT
CTTGGGCTACTAGTTGTGAACTCTGAGTCCATGTGTCCCAGCAGAGCTGT
GGTGAAAAGTATCAAAATTATGAGTCCAGAGTGATAAGAGGAAACTCACA
CATTGAAAAATGCATTACTGCCTTTCCAACTTTTGCATAATGCTTATATA
CTTCATGAAAATCCAATAAGAATTTCATTTTTAATATGCATGTATGAAAG
CAAATTTTTAGAATGTGTTACATGATAAGCTTATGAACAACTCATAATAT
GTACAAAGATAATATTACAATTTGTATTTTAAAGGCTAACACTAGGTTGC
ATTTTACACCATTCCGAGGCAAAACACCCACTACAGATGTTATTGGCTTA
TTCACAAATTTTCGTTATAAGTTCAAAATTTATTTTCTTCCCGAAGTCTA
TTCCAATATTTCTATGGCTTTACGAATGGCCTGCCCCCGAATTTCTTTAC
TTATTGTATTTTACCTTTTCCTTTTTGTCCCTCCCAAATTATCCCTAATA
TCTCCATATATTTTCGCGCCCCCCTTTTTTTTTGTTTTTCCCCACCCCTC
TCCT
TATTTTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACC
GAATGGCTGAGCATCACCTGAAAAAGTGTTCAGCATCCTTAATCATCTGG
GAAATGCAAATCAAAACAACACTGAGATTCCATCTCACACCAGTCAGAAT
GGCTAAGATCAAAAATTCAGGTGACAGGAGATGCTGGCAAGGATGTGGAG
AAAGAGGAACACTCCTCCACTGTTGGTGGGATTGCAAGCTTGTAAAGCCA
CTCTGGAAATCAGTCTGGTGGTTTTTCTTTTTATTGGACATGGTACTACC
GGAGGATCCTGCAATACCTCTCCTCGGCATATATCTAGAAGATGTTCCAA
CTAATAAGAAAGAAACATGCTCCACTATGTTCATAGCAGCCTTATTTATA
ATAGCCAGAAGCTGGAAAGAACCCAAATGCCCCTCAACAGAGGAATGGAT
ATAAAAAATGTGGTACATTTACACCATGGAGTACCACTCAGCTATTACAA
AGAATGAATTTATGAAATTCCTAGGTAATGGCTGTGACTTGAAGGCCTTT
ACTTGACGGAGGATACCCCTTCCCAAATAATTTCCATTGTTTGTATCCAC
TGATATGCGAAATTTTTCTTTTCCTTTTTATATCCACTAACCCGTCTTCT
CTTTTTCATTCTCTTCTTTCTCCACCACCGTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_l13.b1 MSMg01no442_l13.b1 CHROMAT_FILE:
MSMg01no442_l13.b1 PHD_FILE: MSMg01no442_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:01 2005
         (371 letters)



>mm_chr14_93558146_93558915
          Length = 770

 Score =  658 bits (340), Expect = 0.0
 Identities = 361/368 (98%), Gaps = 1/368 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattaatatgggtaaatgactttacatatcatgtgttaaattattaccagttacatttct 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cattaatatgggtaaatgtctttacatatcatgtgttaaattattaccagttacatttct 508

                                                                       
Query: 61  gaaagcattagcacgttattatgaacacagtgtggcttataagcatcatgctaggtgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaaagcattagcacgttattatgaacacagtgtggcttataagcatcatgctaggtgcaa 448

                                                                       
Query: 121 gtctcttgggctactagttgtgaactctgagtccatgtgtcccagcagagctgtggtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtctcttgggctactagttgtgaactctgagtccatgtgtcccagcagagctgtggtgaa 388

                                                                       
Query: 181 aagtatcaaaattatgagtccagagtgataagaggaaactcacacattgaaaaatgcatt 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 387 aagtatcaaaattatgagtccaaagtgataagaggaaactcacacattgaaaaatgcatt 328

                                                                       
Query: 241 actgcctttccaacttttgcataatgcttatatacttcatgaaaatccaataagaatttc 300
           ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 327 actgcctttccaacagttgcatagtgcttatatacttcatgaaaatccaataagaatttc 268

                                                                       
Query: 301 atttttaatatgcatgtatgaaagcaaatttttagaatgtgttacatgataagcttatga 360
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 attttt-atatgcacgtatgaaagcaaatttttagaatgtgttacatgataagcttatga 209

                   
Query: 361 acaactca 368
           ||||||||
Sbjct: 208 acaactca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 770
Length adjustment: 9
Effective length of query: 362
Effective length of database: 761
Effective search space:   275482
Effective search space used:   275482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)