BAC Information

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BAC

Clone NameMSMg01-444D17
Chromosome14 (Build37)
Map Location 53,995,928 - 53,996,428
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308
Downstream geneLOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444D17.T7 (MSMg01no444_d17.b1)MSMg01-444D17.TJ (MSMg01no444_d17.g1)
ACCAG533449AG533450
length7331,119
length of high quality
(start - end)
499 (50 - 548)---
definitionCHROMAT_FILE: MSMg01no444_d17.b1 PHD_FILE: MSMg01no444_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:04 2005CHROMAT_FILE: MSMg01no444_d17.g1 PHD_FILE: MSMg01no444_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:04 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCTCTGCTTATTCTAATTCAGTATATTGTTTGTGTTGTCGGACT
TTACCTCAGCTCCCTTATCTGTCCCTCGGATTCCCAGGTCTTGTCTCTTT
ATGTGTTTCAAAGTTCTTGGAAATTTTGGGTATGCTCATTAGTTTTCTTT
CTTCCCATGTCTCTGATCCACTCTGTCCAATATTGTCTGTCAGCGATGCT
TTCCACTGTGTTTAATTTAATTTCCCAGCATTTATATTTGGTTCATTTTC
AGAGTCTCAATTTTCTTGCTGTTTTTTTCTTCATGTCTTTCAACTTCCCC
TCCAAGTTACTGTTTCACGCACTTTGTAACTTCCTTGTCTAGGTCCTGAA
TTGATTTTCTTGCTCTCTTCATCTGCTTATTTGAGTGCTATCTATTATCA
TTGATCTTTTTTGTTGTTGTTGTTCTTCAAAGCCAGAATCTGATAACATT
TTCTGGCATTTTGGCTGTCTCCTTATCTTTGGCATCCACTACAGAGGAGA
TGTGAGATTGCAGGGGCTGCTTTAGAGTCTCAACTTAAATTATCTAGAAA
TAGATTTGCCAGCATTTCCTTCCCCCTGTGGCTCTGCTTCAGGGTTGTAC
TTGTAATACAAAAGTGTATAAGACTTGTAAGACAGGACTGGAACATTTTA
TGTTTTCCAAGACCGTATATTTTTTCCCCCCCG
CCCCCCCCTGTCCCGCCCCGGGGGTGTGTGGCTGTCTCTCCCCCGGCCTC
GGGCGGGCCGTTGGTTGGTGTTTCTTCGTTTATGGTCCCTCTTGTTGCCT
CGCTCGTCCTGCTCTTTCTGCGTACGAGGGGTGCGCGGCCCGCCTCTGCA
CGGCGTGTGTTGTAGGCGCGGCGGGTGGCGTGGGTTGTCGGGCTGCTGGT
GTGGCGGGGTGGTTGTCGTTGTTCGCGGGCGCGTCCTCTTTCGCCTTGTT
CCGCTTGGCGATAGTGTGTTTTTGTGTGCGGGAGCGCCCCGCCGCCTTCG
CTCCTGCCGCGAGGTGCGGGCTGTTGCGGCTACGTCGTGTGCAGCCCCGG
CCGCGCCGCGTTGTGTAGCGTGCACGTGCTTCATGTTCTGTCGGCCGTGC
GCGTTCGTCGCGTTTTTGCGCCGTGGGTCGGCTCAGTCCGTCTCCGTTCG
CCCCTTGGCGCCCNNTTAACTTTATTATTTGGCTTCCTGCGCCCCTCGGT
TTGCTGCCCTGTTTCGCCCGTTTTCCCGCGTTTCTCCCCTTCTTTTGTCT
ATCGTTTTATTTCTCCGCGTTCGCTCTGCCGTCCTATCGCCGTTGTTTCC
TCTCGGCTTCTCTTTCCTTCCCTCTCGCCGTTGTTTCGTCGTTCGCTTCG
CGGGCGTGTTCGGCCGTCTGTCGTGTCCTCTTGTGCGTTTCCCTCCACGT
GCTGCGGCGTTTTTCGCCTGCTCGGCGTCCGGTTTCTTCGTTTCTCCTGC
GCCGCCCTTCGCCCTTCTCGTCGCCGCCGTCGTTCGTCGTCTCCCTCTTC
TCCTCCTCGTACGCCCTCCCTCTTTATACGCATCCACCCCTGCTTTCGTT
GCGTTCTCCGTTTGGCCTGCGCGCTGGTTGTGGNCGCCGCGCCCGGCGTG
CACCTCTGCTCACCTCACATTCTTTTTCATCTACCTCTCCTTTTCGCGTT
CCCGTTTTCTGCTCCCGCGCGTTCTCCGCGTCCACTGCCGCGTTCTCTGT
TCGGTCTCTCTGCGCCAGCGTTTTCCCGCGCCTTGCCGGCTATTGTGAGA
TCGTGGTCCTCTGCCTCGCGTCCGCCGTGCTTGTTGTTTGTCGCTGTGGT
TGCGGCTTCGTCGTTCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_d17.b1 MSMg01no444_d17.b1 CHROMAT_FILE:
MSMg01no444_d17.b1 PHD_FILE: MSMg01no444_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:04 2005
         (499 letters)



>mm_chr14_53995725_53996628
          Length = 904

 Score =  876 bits (453), Expect = 0.0
 Identities = 488/501 (97%), Gaps = 5/501 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctctgct-tattctaattcagtatattgtttgtgttgtcggactttacctcagct 62
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gaattctctgctacattctaattcagtatattgtttgtgttgtcggactttacctcagct 645

                                                                       
Query: 63  cccttatctgtccctcggattcccaggtcttgtctcttt-atgtgtttcaaagttcttgg 121
           |||||||||||||| ||||||||||||| |||| ||||| |||||||||| |||||||||
Sbjct: 644 cccttatctgtcccacggattcccaggttttgtgtctttaatgtgtttcagagttcttgg 585

                                                                       
Query: 122 aaattttgggtatgctcattagttttctttcttcccatgtctctgatccactctgtccaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aaattttgggtatgctcattagttttctttcttcccatgtctctgatccactctgtccaa 525

                                                                       
Query: 182 tattgtctgtcagcgatgctttccactgtgtttaatttaatttcccagcatttatatttg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tattgtctgtcagcgatgctttccactgtgtttaatttaatttcccagcatttatatttg 465

                                                                       
Query: 242 gttcattttcagagtctcaattttcttgctgtttttttcttcatgtctttcaacttcccc 301
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 464 gttcattttcagagtctcaattttcttgctgagtttttcttcatgtctttcaacttcccc 405

                                                                       
Query: 302 tccaagttactgtttcacgcactttgtaacttccttgtctaggtcctgaattgattttct 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tccaagttactgtttcacgcactttgtaacttccttgtctaggtcctgaattgattttct 345

                                                                       
Query: 362 tgctctcttcatctgcttatttgagtgctatctattatcattgatcttttttgttgttgt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tgctctcttcatctgcttatttgagtgctatctattatcattgatcttttttgttgttgt 285

                                                                       
Query: 422 tgtt---cttcaaagccagaatctgataacattttctggcattttggctgtctccttatc 478
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgttgttcttcaaagccagaatctgataacattttctggcattttggctgtctccttatc 225

                                
Query: 479 tttggcatccactacagagga 499
           ||||| |||||||||||||||
Sbjct: 224 tttggtatccactacagagga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 904
Length adjustment: 10
Effective length of query: 489
Effective length of database: 894
Effective search space:   437166
Effective search space used:   437166
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)