ACGGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATC
CGCGGAATTCCATGGATATTCCCTGTCCAAACAAATTGTGGAACATCCAA
ACTGATCTCTAATGATTATCCCAGTCTCTATTAGGCGAGGAAAAGGAAAG
AAAAATGAACTCTCAGAGTACACAAACTTGACATATCAATTGGATTCTCT
TATACAGAAATTATATTATTTGCCTTAACATATTTCTATGGTAATAGAAT
AGAGTTAAATCATAATTCCTATTATTTTATTTTACACAAGATTGATTTTC
AGTGCCTTTGCTTTTTTAACTTATTTTTTATTTGTTCTTGCTTATATTTC
AAACAAATTCTCGGTGAATTAATTTACTGTATTTTGAGTCTATCTGTTTT
CGAATAATGTTTTCTTTTCCCCCTATGATATAAGACAGCTAATGACTATA
TTTTCTTAATCCTGAAAGGACCATGAGCCAGAAAACTTTCTTTGTCCAAC
CTCAGTGCAGAAAACTTATAAGACATTTTGGACTAAATTTTTCGATAATT
TCCTGGCCAAAAATTCAACTAAAACACTGGCATGGGTCCCCCATTAGGTT
TCTAATTTTTTTTTCCCAACATAACCCAAACCCTGGGGCCCTTGGAACAA
AATGGGCTTCTTCCGACAAACATATTTTGGTTTTTAATTCGGCTTCCCGC
GGGGTCCCACN

AAAAATTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGCAATGAGGCAGCC
TTAGCAGAGCTGAGGATTAGCTTGGGAAGTTGGATATAGAGGAGAGGATG
GAGAGTGAAGACATGCCGCTTACCCACGGCTCTGCTGGCTCATATGGTTC
TTTTCTAGGTGCTGCTGGTAGGTTCCTAGAAGAGGCCTGGGCGAGTATCT
CCTTTCCTCTTCAGAGTGGTCTCTGGTTTCCCAGAGAATAACTAGAGGGA
AGGGGGTTAGGAGAGAAAGATTTTTTTTTTTCACTGAAGATGAGGGAAAT
TAGGGAAGATCGACTGCTTCAGGCTGTGTGCTGGGTGTTGGGAGACTTGT
GGATTGGGTGCGGCTCTTTCTCCCCCCTCTTTTTTCTTTTCCGCTGTTTC
CTTAGTCTTTTTCCCCGTCTGTTTGTCTTGCTCGCTTACTCTCCTCCCCC
CTTTCTTTTCTTCTATTAATCTTCATCTTCTGCTTCCCCCTTTTTCTTTC
TCCCCTCTCCCCCCTTTCTCTTCCCCTCCCTCCCCTTTTTTTCCTTTCTT
TTTTCTTCTCTTTCCTCTTCCCTTCTTCTCCCCCCCCTTTTTTCCCTTCC
TTTCCTCCTCCCCTTCTTTTTTCTTTTCTTCCTTCTCCCCCCGCCCTTCC
CTTTTTCCCCCTTTTTATCCCTCCCACTTTCCCCCTCTTTTTTTCCTCTT
TCTCCTC

Query= MSMg01no444_m23.b1 MSMg01no444_m23.b1 CHROMAT_FILE:
MSMg01no444_m23.b1 PHD_FILE: MSMg01no444_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:49 2005
         (390 letters)



>mm_chr14_113313936_113314725
          Length = 790

 Score =  723 bits (374), Expect = 0.0
 Identities = 386/390 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaaattgtggaacatccaaactgatctctaatgattatcccagtctctattaggcgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 aacaaattgtggaacatccaaactgatctctaatgattatcccagtctctattagacgag 260

                                                                       
Query: 61  gaaaaggaaagaaaaatgaactctcagagtacacaaacttgacatatcaattggattctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaggaaagaaaaatgaactctcagagtacacaaacttgacatatcaattggattctc 320

                                                                       
Query: 121 ttatacagaaattatattatttgccttaacatatttctatggtaatagaatagagttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatacagaaattatattatttgccttaacatatttctatggtaatagaatagagttaaa 380

                                                                       
Query: 181 tcataattcctattattttattttacacaagattgattttcagtgcctttgcttttttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcataattcctattattttattttacacaagattgattttcagtgcctttgcttttttaa 440

                                                                       
Query: 241 cttattttttatttgttcttgcttatatttcaaacaaattctcggtgaattaatttactg 300
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttaaattttatttgttcttgcttatatttcaaacaaattctcggtgaattaatttactg 500

                                                                       
Query: 301 tattttgagtctatctgttttcgaataatgttttcttttccccctatgatataagacagc 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattttgagtctatctggtttcgaataatgttttcttttccccctatgatataagacagc 560

                                         
Query: 361 taatgactatattttcttaatcctgaaagg 390
           ||||||||||||||||||||||||||||||
Sbjct: 561 taatgactatattttcttaatcctgaaagg 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no444_m23.g1 MSMg01no444_m23.g1 CHROMAT_FILE:
MSMg01no444_m23.g1 PHD_FILE: MSMg01no444_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:49 2005
         (238 letters)



>mm_chr14_113494608_113495245
          Length = 638

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctggcaatgaggcagccttagcagagctgaggattagcttgggaagttggatatagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cctggcaatgaggcagccttagcagagctgaggattagcttgggaagttggatatagagg 486

                                                                       
Query: 61  agaggatggagagtgaagacatgccgcttacccacggctctgctggctcatatggttctt 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 485 agaggatggagagtgaagacatgccgcttacccactgctctgctggctcatatggttctt 426

                                                                       
Query: 121 ttctaggtgctgctggtaggttcctagaagaggcctgggcgagtatctcctttcctcttc 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttctaggtgctgctggtgggttcctagaagaggcctgggcgagtatctcctttcctcttc 366

                                                                     
Query: 181 agagtggtctctggtttcccagagaataactagagggaagggggttaggagagaaaga 238
           |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 365 agagtgatctctggtttcccagagaaaaactagagggaagggggttaggagagaaaga 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)