BAC Information

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BAC

Clone NameMSMg01-445E04
Chromosome14 (Build37)
Map Location 88,277,699 - 88,278,297
singlet/doubletsinglet
Overlap genenone
Upstream geneDiap3, EG665324, Tdrd3
Downstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445E04.T7 (MSMg01no445_e04.b1)MSMg01-445E04.TJ (MSMg01no445_e04.g1)
ACCAG534233AG534234
length732741
length of high quality
(start - end)
599 (62 - 660)526 (67 - 592)
definitionCHROMAT_FILE: MSMg01no445_e04.b1 PHD_FILE: MSMg01no445_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:24 2005CHROMAT_FILE: MSMg01no445_e04.g1 PHD_FILE: MSMg01no445_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCTT
ATTACGCATATGGTAAAATATGCCTTTACTCCCAACACTCGGGGAGCAGA
AGCAAGTGGAGCTCTGTGAGTTCGGTGCCACCCTGGTCTATTTAGAAAGT
TCCAGGGCAACCATGTGTATGGAGAATCTCTCTTTTAAAAATCTTCCTTG
TTCTGAACCACAGGAAAATGTATATTGATCCATGGAAATATCCCATGTTA
TGCTGCCTTTTATTTCCTCCTCCATTCAAGTAAAGAGCAGAGTGACCAAG
ACAGACCATTTTTTTCTCTGTTCTTGTCAATGACATTGCTGTCAGTGTTT
TCAATGTGGTAATTAACCTTGTACGGAGAAGCAGTTTTCTCCCAAGAGCA
TGCTTTAGTGGCCCTCTTAAAGCCATTATAACCTGGAGAGGGATCATGTC
CACCTCCACAGTCCCCTCAACACCTGGCAAGGCTTTGCAGATATTATGAG
GCAATAACTTCTCATTAGCATTTCTCTGACTTTATGATGCTAAGTTTAAA
TTTTCTGTGAAGCCCATGCATAAAATCAAGATATCACCTGCCAGGTCTAA
AGCTGTTAGCAACAGCTATTCTTTCTCTATTTGCTCAGATTTCTATGGTA
GTAACAGCTATCTTTTCTCTATTTTGCTCAGGTTCCTATGTAGTGCTAAA
GCCACTGCATTTGATATATTCACCCACATTGA
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACATAAAACCAGAGACACTGAAACTTATAGAGA
AGAAAGTGGAGAAAAGACCTGAAGATATGGGCAGATGGGAAAAATTCCTG
AATAGAACATCAATGGCTTGTGCTGTAAGATTAAGAATCGACAAATGGGA
CCTCATAAAATGGCAAGGCTTCTGTAAGGCAAAGGACACTGTCAATAAGA
CAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCA
GATAGGGGACTAATATCCAGTATATATAAAGAACTCAAGAAGGTGGACTC
CAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAG
AATTCTCACCTGAGGAATACTGAATGGCTGAGAAGCACCTGAAAAGATGT
TCAACATCCTTAATCATCAGGAAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAATTCAGGTGACAGCAG
ATGCTGGCAAGGATGTGGAGAAAGAGGAACACTACTCCATTGTTGGCGGG
ATTGCAAGCTTGTACCATCACTCTGGAAATCAGTCTTGGCGTTCCTTCCA
AAATTGGGCATAGTACTACCCGAAGACCCCCCGTATCTTTTCCGGGGTAT
TTATTCCAATAAATGTTCCACCGCTTAAAAAGACCCATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_e04.b1 MSMg01no445_e04.b1 CHROMAT_FILE:
MSMg01no445_e04.b1 PHD_FILE: MSMg01no445_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:24 2005
         (599 letters)



>mm_chr14_88277369_88278367
          Length = 999

 Score = 1120 bits (579), Expect = 0.0
 Identities = 594/599 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtaaaatatgcctttactcccaacactcggggagcagaagcaagtggagctctgtgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 ggtaaaatatgcctttactcccaacactcggggagcagaagcaagtggagctctgtgagt 870

                                                                       
Query: 61  tcggtgccaccctggtctatttagaaagttccagggcaaccatgtgtatggagaatctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tcggtgccaccctggtctatttagaaagttccagggcaaccatgtgtatggagaatctct 810

                                                                       
Query: 121 cttttaaaaatcttccttgttctgaaccacaggaaaatgtatattgatccatggaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 cttttaaaaatcttccttgttctgaaccacaggaaaatgtatattgatccatggaaatat 750

                                                                       
Query: 181 cccatgttatgctgccttttatttcctcctccattcaagtaaagagcagagtgaccaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 cccatgttatgctgccttttatttcctcctccattcaagtaaagagcagagtgaccaaga 690

                                                                       
Query: 241 cagaccatttttttctctgttcttgtcaatgacattgctgtcagtgttttcaatgtggta 300
           |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 cagaccatctgcttctctgttcttgtcaatgacattgctgtcagtgttttcaatgtggta 630

                                                                       
Query: 301 attaaccttgtacggagaagcagttttctcccaagagcatgctttagtggccctcttaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 attaaccttgtacggagaagcagttttctcccaagagcatgctttagtggccctcttaaa 570

                                                                       
Query: 361 gccattataacctggagagggatcatgtccacctccacagtcccctcaacacctggcaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gccattataacctggagagggatcatgtccacctccacagtcccctcaacacctggcaag 510

                                                                       
Query: 421 gctttgcagatattatgaggcaataacttctcattagcatttctctgactttatgatgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gctttgcagatattatgaggcaataacttctcattagcatttctctgactttatgatgct 450

                                                                       
Query: 481 aagtttaaattttctgtgaagcccatgcataaaatcaagatatcacctgccaggtctaaa 540
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aagtttaaattttctgtgatgcccatgcataaaatcaagatatcacctgccaggtctaaa 390

                                                                      
Query: 541 gctgttagcaacagctattctttctctatttgctcagatttctatggtagtaacagcta 599
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gctgttagtaacagctattctttctctatttgctcagatttctatggtagtaacagcta 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)