BAC Information

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BAC

Clone NameMSMg01-445N06
Chromosome14 (Build37)
Map Location 16,751,170 - 16,751,689
singlet/doubletsinglet
Overlap genenone
Upstream geneNek10, Lrrc3b, LOC667205
Downstream gene1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445N06.T7 (MSMg01no445_n06.b1)MSMg01-445N06.TJ (MSMg01no445_n06.g1)
ACCAG534666AG534667
length749762
length of high quality
(start - end)
524 (37 - 560)484 (67 - 550)
definitionCHROMAT_FILE: MSMg01no445_n06.b1 PHD_FILE: MSMg01no445_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:10 2005CHROMAT_FILE: MSMg01no445_n06.g1 PHD_FILE: MSMg01no445_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTT
AATTCCCACATTTCCATAACAGAGATACAATGTGTCAGGGCTTCAACCTG
TTCACTGGGAGAAGTGACTTAGCTCCTAAAACCATGCCTAAAAGCTATCA
AGGGTGGTCTGGAAAAAATCAAGAGAGCGCCAGGAACAGCTCAAATAATC
AGGATAGTTCAAGAGACAAAGAACCCTGAGGAAGGCTGCTTATGAATTCT
GAGCAAAAAGCAATGCTGGAGCTACTACAATACCCAATCTCAGATTATAT
CACAAAGCCAAATGAAAACTATGAAGACTATGGATCTTCCACTTAAACCC
AGCAGAGGGCCCCAAGGTCCCCAGAGGACTCTCCCTGACTCAGGCCCTCT
AGCACGCCCAGGGCCTCAGGATCATGGGTGAGTGGAACACAACATCAGTT
CGAAACAATCCCAGAGCATCTTGTGCCAGCACTAACAGGGACAAAGGAAC
CTGGCTTGACTACAGGCTGGGATTCATTCCAGTAGGGGCCAGCCTCGAGC
CATCTTCCTCGCAAACCTGGCAGAGGGCCCCAAGGTCCCCAAAGGACTCT
CCATGCCACAGGACCCCTAGCACACCCAGGACCTTGGGATCTCTTGAGAA
GACGTGAGCAGCAGAAACAACATAACTTTTTGGAAAGGGGCCCTTTAGGC
CTTCATCCCCAGGCAGGGGGCAGAATTAAAACCCTGACTCTGGGGTACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTATCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGTTGTCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGGCAAATGGATGGATCTGGAGGGTATCATCCTGAGTGAGGGAACC
CAATCACCAAAGAATTCACCCAATATGTACTCCCTGGACAAGTGGAAATT
AGCCCACAACCAGGGTTACCCACGATATAAAATACATTTCTCAAACACCT
GGAATTCCTTAAAAATTAGAACGGAAGGGGGGGCCTTTTCCCCCTCCTTA
TAAAGGGGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_n06.b1 MSMg01no445_n06.b1 CHROMAT_FILE:
MSMg01no445_n06.b1 PHD_FILE: MSMg01no445_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:10 2005
         (524 letters)



>mm_chr14_16750966_16751889
          Length = 924

 Score =  967 bits (500), Expect = 0.0
 Identities = 515/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttaattcccacatttccataacagagatacaatgtgtcagggcttcaacctg 64
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttaagtcagacatttccataacagagatacaatgtgtcagggcttcaacctg 264

                                                                       
Query: 65  ttcactgggagaagtgacttagctcctaaaaccatgcctaaaagctatcaagggtggtct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcactgggagaagtgacttagctcctaaaaccatgcctaaaagctatcaagggtggtct 324

                                                                       
Query: 125 ggaaaaaatcaagagagcgccaggaacagctcaaataatcaggatagttcaagagacaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggaaaaaatcaagagagcgccaggaacagctcaaataatcaggatagttcaagagacaaa 384

                                                                       
Query: 185 gaaccctgaggaaggctgcttatgaattctgagcaaaaagcaatgctggagctactacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaccctgaggaaggctgcttatgaattctgagcaaaaagcaatgctggagctactacaa 444

                                                                       
Query: 245 tacccaatctcagattatatcacaaagccaaatgaaaactatgaagactatggatcttcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacccaatctcagattatatcacaaagccaaatgaaaactatgaagactatggatcttcc 504

                                                                       
Query: 305 acttaaacccagcagagggccccaaggtccccagaggactctccctgactcaggccctct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acttaaacccagcagagggccccaaggtccccagaggactctccctgactcaggccctct 564

                                                                       
Query: 365 agcacgcccagggcctcaggatcatgggtgagtggaacacaacatcagttcgaaacaatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 565 agcacgcccagggcctcaggatcatgggtgagtggaacacaacatcagttccaaacaatc 624

                                                                       
Query: 425 ccagagcatcttgtgccagcactaacagggacaaaggaacctggcttgactacaggctgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccagagcatcttgtgccagcactaacagggacaaaggaacctggcttgactacaggctgg 684

                                                   
Query: 485 gattcattccagtaggggccagcctcgagccatcttcctc 524
           ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 685 gattcattccagtaggggccaacctcgagccatcttcctc 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)