BAC Information

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BAC

Clone NameMSMg01-446C11
Chromosome14 (Build37)
Map Location 49,284,497 - 49,284,655
singlet/doubletsinglet
Overlap geneOtx2
Upstream geneKtn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik
Downstream geneLOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446C11.T7 (MSMg01no446_c11.b1)MSMg01-446C11.TJ (MSMg01no446_c11.g1)
ACCAG534916AG534917
length734725
length of high quality
(start - end)
47 (245 - 291)159 (417 - 575)
definitionCHROMAT_FILE: MSMg01no446_c11.b1 PHD_FILE: MSMg01no446_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:36 2005CHROMAT_FILE: MSMg01no446_c11.g1 PHD_FILE: MSMg01no446_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCGCTAAANGAATCACTATTTCGNGACCGCCGCGGAANNCCNGNGT
AACCNNACCGCGCGNGNGANCCNCCNGCCNCAGNCNCCCGAGGGCCAGGC
CAATTGGCCCCACCAGCANGCCCAGCNGACAAGAGGGNNAACNACCANGG
CACAGCCGGGGCCGGANNAAGGNGACANGCANGGNGCNCGAGGACAAGCG
ACCGCCAACAGCACNNCCCCCCNCAGGANCGNCCATTTTTTTTACGATTA
GCTCGCAACTCAGACTAACACGGGGCAGAAAAATCATAGCCCTCACAAGC
CATTTTTTTTTTATCACAGAGGAGCAGGCAGCCGGACCCAAGGGNCGTCA
GGACCCCCCACCACAGGCCCACAGGGAAACAACCAGCGAGCAAGCCAAGG
CAGACACAGAACCAAGCGCAAGCACGCCCACCCCGCCGCCACAGGGCCCA
GCACCAAAGACCGACACCACCACCCCCCGAGAGAGGACCCCAACCCAAGA
CCCCAAACCACCGAAACCCCAGCCCCAAGAACCGACACAGAAACCCACCA
CACAGAACAACGAAACACCCCACAACCCCCGCCACCCGCACCCCCCCCCC
ACCAACGCACCAAACCACAACACACACCCCCCAACACCCCCTTTTTTTTT
TCCACGGCGGCCGCACCTTACACATTGACCCCCCCTTTCCCCCTCCCTAC
CCCTGCCTATTCTATCACCCTCCTCCCCAATTCN
GAGAGGCCTGGNGGNCGCCTGGTTCGGACCTGANGNGAANNANAGAAGTT
AGCCCCACCCGCGGGGAAAAACACNCNNANNCCCNGGGACAGNNCAGACC
GGTTATACACGAAGNNAAGANGGGNAGGNANNNANNNACNAGNCNAGCTC
NCACCCAAGGAGAGCGCCNAAACAGAACANNGGACAAAAGCGGCAGGGNC
CAGGANAAAAAGCAGNAACAGAAAGNNCGGGGCGAGGTTTTTTTTGGAGA
GNCAAAACGGCTCAAATTGGCAGGGAAAACTATTTTCACTTTTCCTCCTG
GATATTTTTTTTTTNAAAACAAAACAAAAACAAAACAGGAAAACATTTTC
CACCCCACGGTCACTTCTCCACAGCGAGCTTAGATAATAAACACGGATAG
ATAATAAAGACGGCTGCGGGGCCCTTCCACCTAACTTTCACCGCTTGCTA
AGGATTCCATTCTAGCTTCCTCTCCACGCACAGTGCAAAGGGGAATGGGG
GTGGGGACTCTTTCTAAGACACAAGAGTTAAGGTGACCGCTCTCGAGGAG
AGATGGCTTCCGAGAGCTCATACCTAGGAGCAAATAGCGATAGCGCGGCG
ACTCCCCGACTGCTCTCTCCTCCAGGAGCAAGCGACTTTTTTTTTTTTTT
CTGCCCAGCACCCCGGCAGATCCCCCANCTTGATGTCCCAGACTCGTCTC
CACTGCCTGCTCCCGGATGCACAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_c11.g1 MSMg01no446_c11.g1 CHROMAT_FILE:
MSMg01no446_c11.g1 PHD_FILE: MSMg01no446_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:36 2005
         (159 letters)



>mm_chr14_49284297_49284855
          Length = 559

 Score =  308 bits (159), Expect = 1e-88
 Identities = 159/159 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggggcccttccacctaactttcaccgcttgctaaggattccattctagcttcctctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cggggcccttccacctaactttcaccgcttgctaaggattccattctagcttcctctcca 260

                                                                       
Query: 61  cgcacagtgcaaaggggaatgggggtggggactctttctaagacacaagagttaaggtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgcacagtgcaaaggggaatgggggtggggactctttctaagacacaagagttaaggtga 320

                                                  
Query: 121 ccgctctcgaggagagatggcttccgagagctcatacct 159
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgctctcgaggagagatggcttccgagagctcatacct 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)