BAC Information

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BAC

Clone NameMSMg01-446E05
Chromosome14 (Build37)
Map Location 65,707,703 - 65,707,949
singlet/doubletsinglet
Overlap genenone
Upstream gene1700007N14Rik, 1700049K14Rik, Msra, Kif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3
Downstream geneFzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446E05.T7 (MSMg01no446_e05.b1)MSMg01-446E05.TJ (MSMg01no446_e05.g1)
ACCAG535000AG535001
length761759
length of high quality
(start - end)
247 (65 - 311)313 (67 - 379)
definitionCHROMAT_FILE: MSMg01no446_e05.b1 PHD_FILE: MSMg01no446_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:44 2005CHROMAT_FILE: MSMg01no446_e05.g1 PHD_FILE: MSMg01no446_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
CTGCTTGACTGAACAATTTTGGCTGAAATGGGAAAAAGAAAATAGTACTG
TATGTGTGGATACGTACGTAGGTCTTGGGTGCACAGGTAAAGATACTGAT
CTATCATTTTCTCTTTTAGTAAAGAAACACTGTAAAGCTGAAGAGAGCCG
TGGCTCTAATCAGTGTGGTTATAGTGCATGAGCACAGTCACGGAGGGTGT
AACCATCATCCTGTTGTGTATGCCTATGGGACATGTGATTCTCCGCCTTA
GATGAGTGTCATATCTTATTGGTTGCAACCTGAATCAGACAGGCTGCCTT
GGTAAGTACACTGTAGTGGACACCATGCTTTGGCTTCCTACAATGTATAC
ATAGTGTAGTGGCATCGACCTGTGTGATTATTGGATGACTAAGGCGGTGT
ATTGAGGAATGTATAGACTCATCCTGTCACACTCGTAGCACTTTCGATGC
GTTGGCGTCCCATCATTGATAGACCACCTATTTTTTTGCTTCGTCTCACT
CGTCCTCTTTTTCTTTCCCTATCCTTCTCTTCCGATCTTTTCATCTTCCG
CTCTCCGTCTTCTATTCTCTTCCCCTTTTTTCCTTCTCTCGTTTTTCCCG
TCTTCCTTTTTTTTTTCTTTTTCCCCTATAAATTTTCTTTTTCCACCCCC
TTTTTCGGCCATCTTCCTCCACATCTCTATTTTTTCTTACCCGCTTCCTC
TCCTTGCTTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGTAAGACCTTCTATCCTTAGGTTTTGTTTTTGT
TATTATTTTTGTTTATCAGCTTCACACAAAGCTAGAGTTATCTGGGAAGA
GGGGTTTCAAATGAGAAAATGCCTCCCTTTAGTCTGCATTTCCTTGATTG
ACGATTGATGTGGATGGGGTCAACCCACTATCTGTGGTACTATCTCTGTG
CAGATGTTCCTGAAGCTGATAAGAAAGCAAGCTCAGCAAGCTGTGGGGAG
CAAGCAATAAATATTCTTCCTCCATAGCCTCTGTTTCAGTTCCTGCCTCT
AGGCCCTGACTTCCCTACGTGATGGATGCGATCGGCATCTAAACCAGTTA
AACACTTTGCCTCCTTTTGGTCTCAGTGTGTGTCGCCTATCGTTTTTTTT
TGCTTTTTTTCCCCCTCATTTGCACTTTCCTCCTCTTCCCCTTTTTTCTT
CCTTTCCTTCTATCCTCTTCTATCTATTTTTACTCCTTTCTCCGTCTTTT
CCCCTTTCCTTTTTTTTCCTCCTTTTTTTCCCCTTTTTCTCCCCTCCTCC
TTCTTTTTCCATTTTTTTTCTCTTTTCCTTCCGCTCTTTTTTATTCCCTT
TTTCTCCTCTTCTTTCTTTATTTCTTGTTCATTCCCTTTCTCCTTTCTCT
CTTTCTTTCTTCCCCTCCTTTTTCCTTTCTTTTCACCTCTTTCTTTTTTT
CCTTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_e05.b1 MSMg01no446_e05.b1 CHROMAT_FILE:
MSMg01no446_e05.b1 PHD_FILE: MSMg01no446_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:44 2005
         (247 letters)



>mm_chr14_65707503_65708149
          Length = 647

 Score =  439 bits (227), Expect = e-128
 Identities = 242/247 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattttggctgaaatgggaaaaagaaaatagtactgtatgtgtggatacgtacgtaggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 447 aattttggctgaaatgggaaaaagaaaatagtactgtatgtgtggatacataggtaggtc 388

                                                                       
Query: 61  ttgggtgcacaggtaaagatactgatctatcattttctcttttagtaaagaaacactgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttgggtgcacaggtaaagatactgatctatcattttctcttttagtaaagaaacactgta 328

                                                                       
Query: 121 aagctgaagagagccgtggctctaatcagtgtggttatagtgcatgagcacagtcacgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aagctgaagagagccgtggctctaatcagtgtggttatagtgcatgagcacagtcacgga 268

                                                                       
Query: 181 gggtgtaaccatcatcctgttgtgtatgcctatgggacatgtgattctccgccttagatg 240
           |||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 267 gggtgtaaccatcatcttattgtgtatgcctatgggacatgcgattctccgccttagatg 208

                  
Query: 241 agtgtca 247
           |||||||
Sbjct: 207 agtgtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)