BAC Information

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BAC

Clone NameMSMg01-446N03
Chromosome14 (Build37)
Map Location 19,532,057 - 19,682,191
singlet/doubletdoublet
Overlap geneUbe2e2
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963
Downstream geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446N03.T7 (MSMg01no446_n03.b1)MSMg01-446N03.TJ (MSMg01no446_n03.g1)
ACCAG535424AG535425
length730738
length of high quality
(start - end)		259 (322 - 580)523 (67 - 589)
definitionCHROMAT_FILE: MSMg01no446_n03.b1 PHD_FILE: MSMg01no446_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:27 2005CHROMAT_FILE: MSMg01no446_n03.g1 PHD_FILE: MSMg01no446_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,681,933 - 19,682,191)(19,532,057 - 19,532,579)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTCCTG
GACTGACAAAACTTGGTCTCAATGCTCAAAGTATTATTTTGTTTTTCCAG
TTTGCCATAATTTTAAGTGGTGAGGGGTTTTCAGTGTGACAACTTGTCAC
ACAGGAAAGTCTGAGTAGGTTTAAGAAGGTATTGGAGACTATAAAGTGGC
AAGGTAAACTTATATTTGTGCAGGGATGTATAAGGTATAAAGTGACAGTA
TGTTCAGAAAACCACCAGTACCACCAGGAAGGGCACAGGGATGTATGGAC
TAATTTTGAGATTANGTANCTTTTAACATTAAGTAATGCTGGGTGCTAGT
TATTCAGATATGAAGGAGAAACAAGGAACCTTGTTTCTCTATGGCACTTA
TGTTTTAGCCTTGAAGACTGACCAGGAATTGTTTCAGAACAAAACAAGAA
TGAACAGCTGCCTTTATGAGAAAGGGGTGGAGTCAACAGACCTCATGGTG
GCTGTGCAGTAAAAGATGGAGTAGTTTCAGAGTGGGACTCTTCTTCTGCT
GATTGGGAGGCTCTTTATTCTCAGAGGTTGTTCTTAAATAACAACTTAAA
GAAGAACGTATAGAGGACTGTAAATGATAAGCTTCATATGCTGAAGTCCT
TATTTTTTTTTTTGCTGCAGCCAGAGCATAGCTGCCATAGTTCAGATTGT
TCAAGTCTTGAAATGCACTGTCGTCTTAAG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCATTAATTTAAATAGCAGGAATAAAATTTTCTC
AATGCAGGATAGACAGACAAAGAAAAAGCATCAAAGAAGGCAAGAAAACC
AAGAGTATTCATACCTATTAATATTTTCTCTCTACCCAGGAAGGCTACTT
GCCTCACAGATGAGTGCTTCTTTAATGGCTGGTTGTGGATACATGAATTC
AGTTTGGAAATTGTTTGTTCTTCAGTGTAATTGTAAGCCTCTACTGGTTT
TTCATTAACTACTACAGATTACATGGAGTTTCTTTTTATTTTTTTGTCTT
ACTTGTCTGAATATAAAACTGAAGCCCTACAGGCTTATATTGAGTACAAT
TTGGTATTCTCCAATCTAGCAGAATAAATAACTGCAAATTACAATAAAGT
AACCAAGCATTGCTTTATGTACCAAACCAGTCATCAACAGAAACTGTGGA
TATGTAGAAAGATGTACATATGTTCACACTCAATGATCTCAAAATTGTCT
GTAGCATCCCCTCCTGGTAGTCAAGAGGTCAGCTATCAGAGCAGTCAAGG
GTTATGGCAGGATCTTCATGCTATAAAGACAGGCATCTTGAGGCCCTGGT
GTAAATGGTGATACTCAGGGGATGTGGGAATTAGTAAGACACTCTCCCCC
AGTGCTTGCACATTCCCCTAATTTAGAAAGAGCATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_n03.b1 MSMg01no446_n03.b1 CHROMAT_FILE:
MSMg01no446_n03.b1 PHD_FILE: MSMg01no446_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:27 2005
         (259 letters)



>mm_chr14_19681733_19682391
          Length = 659

 Score =  493 bits (255), Expect = e-144
 Identities = 258/259 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaacattaagtaatgctgggtgctagttattcagatatgaaggagaaacaaggaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tttaacattaagtaatgctgggtgctagttattcagatatgaaggagaaacaaggaacct 400

                                                                       
Query: 61  tgtttctctatggcacttatgttttagccttgaagactgaccaggaattgtttcagaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgtttctctatggcacttatgttttagccttgaagactgaccaggaattgtttcagaaca 340

                                                                       
Query: 121 aaacaagaatgaacagctgcctttatgagaaaggggtggagtcaacagacctcatggtgg 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 339 aaacaagaatgaacagctgcctttatgagaaaggggtggagtcagcagacctcatggtgg 280

                                                                       
Query: 181 ctgtgcagtaaaagatggagtagtttcagagtgggactcttcttctgctgattgggaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctgtgcagtaaaagatggagtagtttcagagtgggactcttcttctgctgattgggaggc 220

                              
Query: 241 tctttattctcagaggttg 259
           |||||||||||||||||||
Sbjct: 219 tctttattctcagaggttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no446_n03.g1 MSMg01no446_n03.g1 CHROMAT_FILE:
MSMg01no446_n03.g1 PHD_FILE: MSMg01no446_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:27 2005
         (523 letters)



>mm_chr14_19531857_19532779
          Length = 923

 Score = 1011 bits (523), Expect = 0.0
 Identities = 523/523 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattaatttaaatagcaggaataaaattttctcaatgcaggatagacagacaaagaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattaatttaaatagcaggaataaaattttctcaatgcaggatagacagacaaagaaaa 260

                                                                       
Query: 61  agcatcaaagaaggcaagaaaaccaagagtattcatacctattaatattttctctctacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcatcaaagaaggcaagaaaaccaagagtattcatacctattaatattttctctctacc 320

                                                                       
Query: 121 caggaaggctacttgcctcacagatgagtgcttctttaatggctggttgtggatacatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggaaggctacttgcctcacagatgagtgcttctttaatggctggttgtggatacatga 380

                                                                       
Query: 181 attcagtttggaaattgtttgttcttcagtgtaattgtaagcctctactggtttttcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcagtttggaaattgtttgttcttcagtgtaattgtaagcctctactggtttttcatt 440

                                                                       
Query: 241 aactactacagattacatggagtttctttttatttttttgtcttacttgtctgaatataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactactacagattacatggagtttctttttatttttttgtcttacttgtctgaatataa 500

                                                                       
Query: 301 aactgaagccctacaggcttatattgagtacaatttggtattctccaatctagcagaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactgaagccctacaggcttatattgagtacaatttggtattctccaatctagcagaata 560

                                                                       
Query: 361 aataactgcaaattacaataaagtaaccaagcattgctttatgtaccaaaccagtcatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataactgcaaattacaataaagtaaccaagcattgctttatgtaccaaaccagtcatca 620

                                                                       
Query: 421 acagaaactgtggatatgtagaaagatgtacatatgttcacactcaatgatctcaaaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagaaactgtggatatgtagaaagatgtacatatgttcacactcaatgatctcaaaatt 680

                                                      
Query: 481 gtctgtagcatcccctcctggtagtcaagaggtcagctatcag 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtctgtagcatcccctcctggtagtcaagaggtcagctatcag 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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