BAC Information

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BAC

Clone NameMSMg01-447M16
Chromosome14 (Build37)
Map Location 124,575,272 - 124,575,631
singlet/doubletsinglet
Overlap geneFgf14
Upstream geneVgcnl1, Itgbl1, LOC668700
Downstream geneGA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447M16.T7 (MSMg01no447_m16.b1)MSMg01-447M16.TJ (MSMg01no447_m16.g1)
ACCAG536160AG536161
length756756
length of high quality
(start - end)		364 (49 - 412)424 (82 - 505)
definitionCHROMAT_FILE: MSMg01no447_m16.b1 PHD_FILE: MSMg01no447_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:48 2005CHROMAT_FILE: MSMg01no447_m16.g1 PHD_FILE: MSMg01no447_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGTTTGACTAATTTGGCTTATTAAATTGAACCTCGCATAC
TGCTTCCCCCTCTTTCTCAGCAGAAGTTAGCTACTGTAGCCAGGTCCAAC
TGGGTTTCATCCAATGGTCCCAGCTTTCAGGTTTATCTACTGCTGCCTAT
AGATGAGAATTCTGCCAGTTTTGTTCATCATTATTTTCTCTAACACTCTT
TTCAAATGCATTCTAGTAGCTATTTAAGAGTTTTATATGCTGCCTCTGAG
GAATACATTCCAACACATTATCAAGACCAAAACCTTAAGATTAAGTCCTT
AGAAGACAATTTACATTTATTGAATTTTAGGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTNTNTTNNNTNTTTNTTTTTTTTTTNTTTTTTTTTTTTT
TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTNNTTTTTTTTTTTTTTTCTTTTTTTCTTTTTTTTTTTT
CTTTTTTTTTTTTNTTTTTTTTCTTTTTTTTTTTTTCTTTTTTCTTTTTT
TTTTCTTTCTTTTTTTTTCTTCTTTCTTTTCCTTTCTCTCCTACCTTCCT
CCTCCTCTTTTCCTTTTTTTTTCCTTTTTCCCCCCTCCCCTTTCTTCCCT
CCTTCTCCTCTTCTTTTTTCTTTTCCTTCTTTCTCTATTTCTGTTTTTTC
TTTTTN

TTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACACTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAAGCACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAATCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTACAAAGA
ATGAATTTATGAAATTCCTAGCCCAATGGATGGACCTTGGAGGCATCATC
CTGAGTGAGGGAAACACTTCCCAAGGAACTCCCCCTTATGTTCTCCCTGA
TAGTGGGAATTAATCCCCAAATCTAGGTTACCCCGCAATAATAAAACATT
TTCTTATCCCTTGGATCTCCAACAATTATAACCCAATGGTGGGCTCCTTT
CCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_m16.b1 MSMg01no447_m16.b1 CHROMAT_FILE:
MSMg01no447_m16.b1 PHD_FILE: MSMg01no447_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:48 2005
         (364 letters)



>mm_chr14_124575068_124575831
          Length = 764

 Score =  681 bits (352), Expect = 0.0
 Identities = 358/360 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgtttgactaatttggcttattaaattgaacctcgcatactgcttccccctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgtttgactaatttggcttattaaattgaacctcgcatactgcttccccctc 264

                                                                       
Query: 65  tttctcagcagaagttagctactgtagccaggtccaactgggtttcatccaatggtccca 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttttcagcagaagttagctactgtagccaggtccaactgggtttcatccaatggtccca 324

                                                                       
Query: 125 gctttcaggtttatctactgctgcctatagatgagaattctgccagttttgttcatcatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctttcaggtttatctactgctgcctatagatgagaattctgccagttttgttcatcatt 384

                                                                       
Query: 185 attttctctaacactcttttcaaatgcattctagtagctatttaagagttttatatgctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attttctctaacactcttttcaaatgcattctagtagctatttaagagttttatatgctg 444

                                                                       
Query: 245 cctctgaggaatacattccaacacattatcaagaccaaaaccttaagattaagtccttag 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 cctctgaggaatacattccaacacattaacaagaccaaaaccttaagattaagtccttag 504

                                                                       
Query: 305 aagacaatttacatttattgaattttaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagacaatttacatttattgaattttaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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