BAC Information

Click to search

BAC

Clone NameMSMg01-448B23
Chromosome14 (Build37)
Map Location 102,220,091 - 102,220,309
singlet/doubletsinglet
Overlap geneLmo7
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3
Downstream geneLOC100043795, LOC545567, LOC669278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448B23.T7 (MSMg01no448_b23.b1)MSMg01-448B23.TJ (MSMg01no448_b23.g1)
ACCAG536411AG536412
length858763
length of high quality
(start - end)
220 (53 - 272)452 (80 - 531)
definitionCHROMAT_FILE: MSMg01no448_b23.b1 PHD_FILE: MSMg01no448_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:16 2005CHROMAT_FILE: MSMg01no448_b23.g1 PHD_FILE: MSMg01no448_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAATCCGC
GGAATTCACTTTCCCTTGCTCTGAGGTAGAACTGAGAACTCAGAGTCATC
TCCAAAATCAGCAGAAAACATTAGATGCCCAAGGAGAGGACAGATCCCTG
GATCCTAAGTAACTGTTTCATCTTGCTACTCTATAGACATGTAGACGTCT
TAGGCTCTGATGTGTTTTCTGGGTTGGTTGGTCCGTAGGTTGGTTAGGAG
GTAGGTTAGTTTTGTTTTGTTTCGNGTGNTTTTCTATCCCTCTTCTTTCC
TTCCTTTTCTTCTCTCTTCTTCTTTTTTTTTTCTTTCTCCCCTCTCCCTC
TTTGCCGTCCCCCCGCTCTTTTTTTTCCTCTTCCCCTCTTGGTGGGGGGG
GTTTCTTCTTCCCCGCGCTTCCCCTTCTTCCTCCTTTTTTCGCCGGTTTG
TTTCGCCCTCCTCTTTTTTTCCCCCCGCTTATTTTCTGTTCTCTCCCTTC
CCTCTTTCCCTCTTTTTCCCTTTTTTTCCCCCGGTTTCGTCTCTTTCTTG
TTCTTCTCTATTTTACCTTCCCCCCCCTTACTTATTTCCGCTTCCTTTGT
TTCCCTGATCGTTACTTATCCCCTTTTTCTCCATCTATACCGTCTTCTCT
GAAACATGTTGGAACAACATTCATCCTTTTGTTTTCACCTTTTGCTCTCC
TCTTTTCACACTTCATTATTTATTTATCTCCGCGTTCAGCTGCATCTATT
TCTCATTATTTTATCCCCTCGCGACCTCTTCTCCTTTCCTCTTTTAATCT
TCCCATTCCCGCTCTTTTACCCTCAATTTTTTACGTACTTCTTTNTAACT
CTTCTTCC
NNGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGACAAGGCATTTTAAATG
GAGAAATAAAACCTTTATAATGAACAAAGCTGAAGAGAACTTACTGCCGG
TTTATTTCCATTGTAAGAAATATAAAGGAGTTTCTCTATTGAGAAGCATT
GTGATAACAGGAAGACATTTGGACCTATGCAGAACCTGGGAAGCACTGGA
CATGGGTCAAGTAAAGGCAAATCAAATATTCTTTTTGAAGATTGATCTTT
ATTCTTAAGTGTACAAATGCATGCATGCACATGAGTGCAGTGCCCACAGA
GGCCAAGGCATCAAGTCCCGTGTGAAGTAGAATTACAGGTGACTGTGACC
TGTCTGATGTGTGTGCTAGGAATCAAACAAGAGCAAACCACTGATCTTTG
CAGCTCCATTTTTTTTTCTTATTATATTGTCAATAAAAGGCAATTATGTG
GCTGGGCATGGTGGCCCTCACCTGTATCCCAGTGCTGGGGAGGGTCAGAC
AGGGAAGCTCAACTTTTTATGCAACTTGGGCTTCAACTGAGACCTTTTCT
CCAGAACAAAAATGAAGCTGGATGCCTGGAAAAAAAGAAAATAAATTGGG
AGGCTATGCCCCACTTAAGAAAAGACCAAAAGGCGTTGGAAAATTTTTGT
TTAACGCCGGGGGGGTCTAATGTAGGATACAACTTGGGGCTCTTTTTGAA
AACCCCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_b23.b1 MSMg01no448_b23.b1 CHROMAT_FILE:
MSMg01no448_b23.b1 PHD_FILE: MSMg01no448_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:16 2005
         (220 letters)



>mm_chr14_102219891_102220511
          Length = 621

 Score =  369 bits (191), Expect = e-107
 Identities = 212/219 (96%), Gaps = 1/219 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcactttcc-cttgctctgaggtagaactgagaactcagagtcatctccaaaatcag 59
           |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aattcactttccacatgttctgaggtagaactgagaactcagagtcatctccaaaatcag 360

                                                                       
Query: 60  cagaaaacattagatgcccaaggagaggacagatccctggatcctaagtaactgtttcat 119
           |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cagaaaacaaaagatgccccaggagaggacagatccctggatcctaagtaactgtttcat 300

                                                                       
Query: 120 cttgctactctatagacatgtagacgtcttaggctctgatgtgttttctgggttggttgg 179
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cttgctactctatagacacgtagacgtcttaggctctgatgtgttttctgggttggttgg 240

                                                  
Query: 180 tccgtaggttggttaggaggtaggttagttttgttttgt 218
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tccgtaggttggttaggaggtaggttagttttgttttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 621
Length adjustment: 9
Effective length of query: 211
Effective length of database: 612
Effective search space:   129132
Effective search space used:   129132
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)