BAC Information

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BAC

Clone NameMSMg01-448F16
Chromosome14 (Build37)
Map Location 55,257,631 - 55,258,029
singlet/doubletsinglet
Overlap geneCdh24
Upstream geneOTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik
Downstream geneAcin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448F16.T7 (MSMg01no448_f16.b1)MSMg01-448F16.TJ (MSMg01no448_f16.g1)
ACCAG536589AG536590
length710793
length of high quality
(start - end)		---399 (78 - 476)
definitionCHROMAT_FILE: MSMg01no448_f16.b1 PHD_FILE: MSMg01no448_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:36 2005CHROMAT_FILE: MSMg01no448_f16.g1 PHD_FILE: MSMg01no448_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTTTCGCTGCTCCCCCTCCCCTCTTCACTACTCCAGCCTTGTTTCTAT
ATTATCCGACTCTCACTCACCGCGGCCGCTTGCTTAGCTCTAGCCCCCGC
TGCCAACCGCCCTTCACCCTTACTTATTTCCTCTGCGCCTCGTGCTAGTC
CCCTACCTTATTCCCTCCCCTACCCTATCGTTCCTGCACCCTTCCCTTAG
CTTGCCCGTCGCCTTGCGAGTCGTTTATCGCACGCGCGCCGAAGACTACA
ACCTCAATTACGGACCCACCATAGCGCCAAAACACAAAACCGAATAAATA
ATGGCAACCCCTCATCATCACGTATGAAATAGGGGAACAGGCAGGAGCAA
TTACCAGTCTACCCCGCTGCGAGGCGATGACGCTTCGTCGTCGCGCAATG
GTACGCGCTATCTACCCGCACCAAAAGCTAATAAAAAACGTAAAAGACCC
TTTATGGCACAATTTTTTAAACGAACCACCAAAAAATATACAGAAATTTT
TTAATCTAGAGCATTTTAAATCGAATCGACGCCCGCTCGTTATGTCGATA
TAAATAACCAAATAATGACAAATATCGCAGACATTGCAAATTTAAGGCGA
AAATAAACAAGCGCGTAACACTCGATCAAAATTAACGATTCAAAATTTGA
GGGATGTAATAATAACTTCGAAGGGCAAATATAAGGAACACCCCATGGCG
ACCAATAATA

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTAGACAACCAAAGCAGAT
GGAGGAGTAAAAGAACCCCAGGTAAGCTAGGGCACCCAGAACTGGGGTGC
TCACCAACATTGGACATCTCAGGCACGGTGGCATGGTAGGGCCCGAGGGG
AAACACAGGCGGATTGTCATTGATGTCTTGCACTTTGATGATGAACTCCG
ATGGGGGTTCCAGGGGCCGGTTAGAGGCACGGTCCACAGCTTGGGCCAGC
AGCACATATTGTGCCTTCTCTTCCCGATCCAGGCTCTTGGTCACATGGAT
ATTGCCTGTGGCCTCATCAATCACAAACACAGTGCCTGCCCCCTCCCCGG
TCAGCAGGTACTTGGTGCGGCCCTCACCCCGGTCAACATCTGAGTGCAGC
TGCAAGAGTCAAGAGAAAGCGGCAGAAAGCTCCAAGTGCAGAGCACACGG
GGTTAGAGCCTAGGTTTGGGTGGGACGTGAGGAATGCCCGGGGACCCAGG
TCATTGCAGACTGATGGAAGTTCTGGGGCAGGGCCTAAAGGTTCGAAAAA
ATCGCCCCGGAGAGAGGTTACCCCTTCCTTGTGCCAAAAGAAAAGTCTCT
GGGACCAAAATATCCCCCCGGGCCAAAAAATGGGTTTTTACACCACTTTT
TTTTCTGTCCGGAATACGGGTAAATCTTAAGGGGTCCCCGGGCCTTCCCC
CCCTGTGTGTGCCGACCGTTCTTTCCCCCCCTTCTTTCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_f16.g1 MSMg01no448_f16.g1 CHROMAT_FILE:
MSMg01no448_f16.g1 PHD_FILE: MSMg01no448_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:36 2005
         (399 letters)



>mm_chr14_55257431_55258229
          Length = 799

 Score =  772 bits (399), Expect = 0.0
 Identities = 399/399 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggtagacaaccaaagcagatggaggagtaaaagaaccccaggtaagctagggcaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggtagacaaccaaagcagatggaggagtaaaagaaccccaggtaagctagggcaccc 260

                                                                       
Query: 61  agaactggggtgctcaccaacattggacatctcaggcacggtggcatggtagggcccgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaactggggtgctcaccaacattggacatctcaggcacggtggcatggtagggcccgag 320

                                                                       
Query: 121 gggaaacacaggcggattgtcattgatgtcttgcactttgatgatgaactccgatggggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaaacacaggcggattgtcattgatgtcttgcactttgatgatgaactccgatggggg 380

                                                                       
Query: 181 ttccaggggccggttagaggcacggtccacagcttgggccagcagcacatattgtgcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccaggggccggttagaggcacggtccacagcttgggccagcagcacatattgtgcctt 440

                                                                       
Query: 241 ctcttcccgatccaggctcttggtcacatggatattgcctgtggcctcatcaatcacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcttcccgatccaggctcttggtcacatggatattgcctgtggcctcatcaatcacaaa 500

                                                                       
Query: 301 cacagtgcctgccccctccccggtcagcaggtacttggtgcggccctcaccccggtcaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacagtgcctgccccctccccggtcagcaggtacttggtgcggccctcaccccggtcaac 560

                                                  
Query: 361 atctgagtgcagctgcaagagtcaagagaaagcggcaga 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctgagtgcagctgcaagagtcaagagaaagcggcaga 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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