BAC Information

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BAC

Clone NameMSMg01-449E05
Chromosome14 (Build37)
Map Location 95,554,355 - 95,554,806
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043356, LOC100043783, LOC677613
Downstream geneLOC100043784, LOC382931, 4921530L21Rik, Klhl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449E05.T7 (MSMg01no449_e05.b1)MSMg01-449E05.TJ (MSMg01no449_e05.g1)
ACCAG537278AG537279
length750752
length of high quality
(start - end)
452 (78 - 529)240 (81 - 320)
definitionCHROMAT_FILE: MSMg01no449_e05.b1 PHD_FILE: MSMg01no449_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:50 2005CHROMAT_FILE: MSMg01no449_e05.g1 PHD_FILE: MSMg01no449_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGAGGC
GCGGAATTCTGCATTTTTACAGATAAGGGTGTATATAAAAATGAGAGAGG
TACAAGATTGTATAGGTGGTACCCCAGGGAAAATCACTACAAAGATGCCA
AGTCTGATAATTTACATATAATAAAGCCCTTTTTTCTTTCCACCCACTCA
CATTTTGGTGACCAAGCATGGATTGCAGTAGACATCCATGTCTTAGAAAT
AAGCTTGGTTCTGTTTCTGTATTTCAGTACTTTACTGTCCTCATGGTAAA
TCATGTACATTATAATAGAAGATGTTTATTTATACAACCAGATGCATAAT
TCAAATTAAAATCAAGGGATTCCGCTGGGTGTGGTGGCACAGGCCTTTAA
TCCCAGCACTTGGGAGGCAGAGGCAGGTGAATTTCATAGTTTGAGTCCAG
CCTGGTCTACGGAGTGAGTTTCAGGAAAGCCAGGGCTACACAGAGAAGGC
CTGTCTCGAAAACAAAAAACAAAAAAGTACAAAGATAAAACCAACCTACC
AAACAAAAACTAATAACATCAACGGTACGTCTTCTCTGAGTTTTCTAGCT
GAACATTTAAAAATATTATTTAGTATTTATTTTTATAACCTGTATGCTAT
ATGCTAAAATAAACCTATTTTTTTGATATAAAACTTTATTATAAACGCCT
GTTATATGACCTTTGTGCTTTGTTCAATCACAAATATTAGATAGGTTTAG

NCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTAACCGAAAAAGGGGCACCTGAGGAATACCGAATGGC
AGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCATATTTTTGTACATAGNACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCTAAATGCCCCTCATCAGAGGAATGGATACTGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTTCTAGCCAAATGGATGGACCTGTAGGGCATCATCCTGA
GTGAGGTTACACTTTCCCCAAGAAACTCACTCACATTATGGATTTCCCCT
GATAATTGGGAAAAAAAACTCCTTAACCTTTAGGATAACCCCACAAAATA
CATTATTTTATTCGGGTTAAATACCCTGCTATCCTCATGTGATGACAGAG
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_e05.b1 MSMg01no449_e05.b1 CHROMAT_FILE:
MSMg01no449_e05.b1 PHD_FILE: MSMg01no449_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:50 2005
         (452 letters)



>mm_chr14_95554311_95555162
          Length = 852

 Score =  820 bits (424), Expect = 0.0
 Identities = 445/452 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtgtatataaaaatgagagaggtacaagattgtataggtggtaccccagggaaaatcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggtgtatataaaaatgagagaggtacaagattgtataggtggtaccccagggaaaatcac 437

                                                                       
Query: 61  tacaaagatgccaagtctgataatttacatataataaagcccttttttctttccacccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tacaaagatgccaagtctgataatttacatataataaagcccttttttctttccacccac 377

                                                                       
Query: 121 tcacattttggtgaccaagcatggattgcagtagacatccatgtcttagaaataagcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcacattttggtgaccaagcatggattgcagtagacatccatgtcttagaaataagcttg 317

                                                                       
Query: 181 gttctgtttctgtatttcagtactttactgtcctcatggtaaatcatgtacattataata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gttctgtttctgtatttcagtactttactgtcctcatggtaaatcatgtacattataata 257

                                                                       
Query: 241 gaagatgtttatttatacaaccagatgcataattcaaattaaaatcaagggattccgctg 300
           |||||||  ||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gaagatggctagatatacaaccagatgcataattcaaattaaaatcaagggattccgctg 197

                                                                       
Query: 301 ggtgtggtggcacaggcctttaatcccagcacttgggaggcagaggcaggtgaatttcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ggtgtggtggcacaggcctttaatcccagcacttgggaggcagaggcaggtgaatttcat 137

                                                                       
Query: 361 agtttgagtccagcctggtctacggagtgagtttcaggaaagccagggctacacagagaa 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 136 agtttgagtccagcctggtctacagagtgagtttcaggaaagccagggctacacagagaa 77

                                           
Query: 421 ggcctgtctcgaaaacaaaaaacaaaaaagta 452
             ||||||||||||||||||||||||||||||
Sbjct: 76  accctgtctcgaaaacaaaaaacaaaaaagta 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)