BAC Information

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BAC

Clone NameMSMg01-449F12
Chromosome14 (Build37)
Map Location 52,592,199 - 52,592,386
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13
Downstream geneE130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449F12.T7 (MSMg01no449_f12.b1)MSMg01-449F12.TJ (MSMg01no449_f12.g1)
ACCAG537340AG537341
length730728
length of high quality
(start - end)		272 (333 - 604)188 (131 - 318)
definitionCHROMAT_FILE: MSMg01no449_f12.b1 PHD_FILE: MSMg01no449_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:56 2005CHROMAT_FILE: MSMg01no449_f12.g1 PHD_FILE: MSMg01no449_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNAATCTATAATTTGCGGCCGCTAAANGAATCACATTTCAAACAGGA
GCCGCGGAATTCTCACCTGACGAATACCGAATGGNAGAGAAGCACCTGAA
AAAATGTTCAACATCCTTAATCATCAGGCAAATGCAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGT
GACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGTATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGT
TCCTCAGAAAATTGGACATAGTATNATCGTATGATCCAGCAATACCTCTC
CTGGGCATATATCCAGAACATGCCCCAACTGGTAAGGAGGACACATGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAAC
CCAGATGCCCCTTAACAGAGGAATGGATACAGAAAATGTGGTACATCTAC
ACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCT
AGCCAAGTGGATGGACCTGGAGAGCATCATCCTGAGTGAGGTAACACATT
CACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCC
AAAACATATTATACCCTTGATATAAGATACAATTTCCTAAACACATGAAA
CTCAAGAATAATGAAGACTGAAGTGTGGAN

TTTCCACGATGAAGTGGGAGGCCTGGNGGNCGCCTGGTCCCGACTGTAGG
NGAACNANAGAAGTTACAAAAAAAGGCAGGACAGCCAGGGCTACACAGAG
AAACCTTGTCTAGAAAATTTNNCCCAAAAAAAAAAAAAAAAAAAAACCAA
AACAAAAAAACAATCAAGTGTTGCGAAATTTTTGTATTCCCTGCCAATTA
TACTATAGGATATTTTAGGTACTAATTATATCAAGAAACATAAATACTTA
ATGTTTTCATGGATGTTGTTGTTATTAAATTTTGATATCTGTTGTAAACT
CTAGATAAAAAAAATTAATCTAATCCTCTAGGNAGAGAAAATGGAGTTAA
ATTTACTTTAAAAACAAGGCACCTTTTGGTTTTATTCAAATTATACTGAG
TAAAAGAATATGAATGCGCGCGCGTGTTTATAAAGAAAATAAAAAACTTG
AATATTTCTAATATTAATTTGAATAATGTTGGCATTTAGGGTAAGCAAAG
CATCATAACAAAAGGGTATGACCAAGTGAAAGGGCACAATATTTTCATTT
GTAACTTGTTAAAACCAAGATTAATATTATTTTATTTTGGGGCAGTGGCG
GCAAATGTCTTTAACGTCAGAACTTTGAAGGCAGGGGCTGGCAATGAAGT
TGAAGCCTTTCTATTTTAATCAGTGAGTTCCAGGACAGCCAGCATGTGAA
GAAAAAAATTTCCCCTTAAAAAAATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_f12.g1 MSMg01no449_f12.g1 CHROMAT_FILE:
MSMg01no449_f12.g1 PHD_FILE: MSMg01no449_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:57 2005
         (188 letters)



>mm_chr14_52591999_52592586
          Length = 588

 Score =  310 bits (160), Expect = 5e-89
 Identities = 181/188 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaaaaaaaaaaaaaccaaaacaaaaaaacaatcaagtgttgcgaaatttttgtattcc 60
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 388 aaaaaaaaaaaaaaaaccaaaacaaaaaaacaaccaagtgttgcgtaatttttgtattcc 329

                                                                       
Query: 61  ctgccaattatactataggatattttaggtactaattatatcaagaaacataaatactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctgccaattatactataggatattttaggtactaattatatcaagaaacataaatactta 269

                                                                       
Query: 121 atgttttcatggatgttgttgttattaaattttgatatctgttgtaaactctagataaaa 180
           ||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 268 atgtcatcatggatgttgttgttattagattttgatatctgttgtaaactctagataaga 209

                   
Query: 181 aaaattaa 188
           | ||||||
Sbjct: 208 agaattaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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