BAC Information

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BAC

Clone NameMSMg01-449M11
Chromosome14 (Build37)
Map Location 50,286,083 - 50,286,317
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
Downstream gene3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449M11.T7 (MSMg01no449_m11.b1)MSMg01-449M11.TJ (MSMg01no449_m11.g1)
ACCAG537667AG537668
length750775
length of high quality
(start - end)
279 (332 - 610)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no449_m11.b1 PHD_FILE: MSMg01no449_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:29 2005CHROMAT_FILE: MSMg01no449_m11.g1 PHD_FILE: MSMg01no449_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATC
CGCGGAATTCTCACCTGTTCCCTACCGAATGGCAGAGAAGCACCTGAAAA
AACGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAATTGGACATAGTACCACCTTATTATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
CCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCA
TAAAGAAACTCACACAATATCTACTCACTGATAAGTGGATATTAGCCCAA
AACCTAGGATACCCATGATATTAGATATAATTTCCCTAACACATGAAACT
CCAGAAAAATGAAAACTGAAGTGTGGACCCTATGGCCCCCCTTAGAAATG

NCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGACATAAACAATTCCCATGTACTAGAAGGGAGTGACTGC
CTATTTCCATGTGTGCCATGCCTGACTGCTGTTTCAGTCACTGCTCTGCC
TCCAGGAGTCTGTCATGGGGTACTATTGCTTGAATAAAATGCATTAACAA
GGTAGTTGTTGTTAAACGTGCACAGACCTACACAAAAAAGGAACTGATCT
TGTTCTAATGTTTTGTCCTAATTCAGATCCCATAGCTGTGCTCCCTGACC
TGAGGGTCCCAGTCTCCCTTTTTTCTTCGATTGGNAATAAAGAAGTGTTG
TACAGCATATGACTGCCCAGGGAGATGGAGGTGGGACATTTAGATTGCAT
GAGCAAGGGGACAACCAATAGAGAGTTGTAAGAGGAGAATCATCATGACT
CACAGGAAAAAAATATCAGATTTAAAAGCTGCAAGCGAGAGAGAATCCAA
CAATGTATGTGGAAAGGAAATATCATCCTAACGTTGCCCATAAAGTTACC
ATGTCACCTAAGATAAACTATAAATTTAATAAAGCGGTAAATCTAGTTAC
CACCCTGAAACATCTTTGCGCCATTTACATTTGACGTCCAACATTAGCAC
CACACTTTTTTTTTTTTTTTTTAGCCTACCCCCATTATACTTGGCAACCT
TCCCCTCTCTCTTTCCTTTCCCCTACTCCGCCGATCTATTTTTCCCCTTC
TCATCTTTCCTTTATTTTCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_m11.g1 MSMg01no449_m11.g1 CHROMAT_FILE:
MSMg01no449_m11.g1 PHD_FILE: MSMg01no449_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:29 2005
         (239 letters)



>mm_chr14_50285948_50286585
          Length = 638

 Score =  433 bits (224), Expect = e-126
 Identities = 233/236 (98%), Gaps = 1/236 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtactagaagggagtgactgcctatttccatgtgtgccatgcctgactgctgtttca 60
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 370 catgtactagaagggagtgactgcctatttccatgtgtgccatg-gtgactgctgtttca 312

                                                                       
Query: 61  gtcactgctctgcctccaggagtctgtcatggggtactattgcttgaataaaatgcatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtcactgctctgcctccaggagtctgtcatggggtactattgcttgaataaaatgcatta 252

                                                                       
Query: 121 acaaggtagttgttgttaaacgtgcacagacctacacaaaaaaggaactgatcttgttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 251 acaaggtagttgttgttaaacgtgcacagacctacacaaaaaaggaactgaacttgttct 192

                                                                   
Query: 181 aatgttttgtcctaattcagatcccatagctgtgctccctgacctgagggtcccag 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aatgttttgtcctaattcagatcccatagctgtgctccctgacctgagggtcccag 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space:   144670
Effective search space used:   144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)